Evidence map›Paper›PMID 28594468›Full record

ArticleJournal of microscopy2017

Application of an advanced maximum likelihood estimation restoration method for enhanced-resolution and contrast in second-harmonic generation microscopy.

Mayandi Sivaguru, Mohammad M Kabir, Manas Ranjan Gartia, David S C Biggs, Barghav S Sivaguru, Vignesh A Sivaguru, Glenn A Fried, Gang Logan Liu, Sakthivel Sadayappan, Kimani C Toussaint

Open access · greenAbstract read
In one paragraph

Article in Journal of microscopy, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Mayandi SivaguruMicroscopy and Imaging Core Facility, Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.
Mohammad M KabirDepartment of Electrical and Computer Engineering and Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.ORCID 0000-0002-8194-8455
Manas Ranjan GartiaDepartment of Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA, U.S.A.
David S C BiggsKB Imaging Solutions LLC, Loomis, CA, U.S.A.
Barghav S SivaguruCollege of Liberal Arts and Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.
Vignesh A SivaguruCollege of Liberal Arts and Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.
Glenn A FriedMicroscopy and Imaging Core Facility, Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.
Gang Logan LiuMicro and Nanotechnology Lab, Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, U.S.A.
Sakthivel SadayappanDepartment of Internal Medicine, University of Cincinnati, OH, U.S.A.
Kimani C ToussaintDepartment of Mechanical Science and Engineering, University of Illinois at Urbana Champaign, Urbana, IL, U.S.A.
University of Illinois Urbana-Champaign · USBehavior Imaging Solutions (United States) · USLouisiana State University · USUniversity of Cincinnati · US

Funding

Fast myosin binding protein-C and cardiac contractility in heart failureR01HL105826 · NHLBI · UNIVERSITY OF CINCINNATI · PI SADAYAPPAN, SAKTHIVEL · 2011 to 2025
$4.5M
Proteomic approaches to validate novel cardiac biomarkers for myocardial infarctiK02HL114749 · NHLBI · UNIVERSITY OF CINCINNATI · PI SADAYAPPAN, SAKTHIVEL · 2012 to 2016
$498k
NHLBI NIH HHS K02 HL114749NHLBI NIH HHS R01 HL105826
6 · The paper itself

Abstract

Second-harmonic generation (SHG) microscopy has gained popularity because of its ability to perform submicron, label-free imaging of noncentrosymmetric biological structures, such as fibrillar collagen in the extracellular matrix environment of various organs with high contrast and specificity. Because SHG is a two-photon coherent scattering process, it is difficult to define a point spread function (PSF) for this modality. Hence, compared to incoherent two-photon processes like two-photon fluorescence, it is challenging to apply the various PSF-engineering methods to improve the spatial resolution to be close to the diffraction limit. Using a synthetic PSF and application of an advanced maximum likelihood estimation (AdvMLE) deconvolution algorithm, we demonstrate restoration of the spatial resolution in SHG images to that closer to the theoretical diffraction limit. The AdvMLE algorithm adaptively and iteratively develops a PSF for the supplied image and succeeds in improving the signal to noise ratio (SNR) for images where the SHG signals are derived from various sources such as collagen in tendon and myosin in heart sarcomere. Approximately 3.5 times improvement in SNR is observed for tissue images at depths of up to ∼480 nm, which helps in revealing the underlying helical structures in collagen fibres with an ∼26% improvement in the amplitude contrast in a fibre pitch. Our approach could be adapted to noisy and low resolution modalities such as micro-nano CT and MRI, impacting precision of diagnosis and treatment of human diseases.

Indexed as

Likelihood FunctionsAlgorithmsAnimalsChickensImage Processing, Computer-AssistedImaging, Three-DimensionalMiceMicroscopyMyocardiumTendonsDeconvolutionimage processingnonlinear microscopysecond-harmonic generation

Identifiers

PMID28594468
PMCPMC10936585
OpenAlexW2624213077

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.