Evidence map›Paper›PMID 28594175›Full record

ArticleJournal of medicinal chemistry2017

Hepatitis C Virus NS3/4A Protease Inhibitors Incorporating Flexible P2 Quinoxalines Target Drug Resistant Viral Variants.

Ashley N Matthew, Jacqueto Zephyr, Caitlin J Hill, Muhammad Jahangir, Alicia Newton, Christos J Petropoulos, Wei Huang, Nese Kurt-Yilmaz, Celia A Schiffer, Akbar Ali

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 39 citations in OpenAlex.

  1. Pooled it
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  13. Resistance outside the substrate envelope: hepatitis C NS3/4A protease inhibitors.Critical reviews in biochemistry and molecular biology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ashley N MatthewDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.
Jacqueto ZephyrDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.
Caitlin J HillDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.
Muhammad JahangirDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.
Alicia NewtonMonogram Biosciences , South San Francisco, California 94080, United States.
Christos J PetropoulosMonogram Biosciences , South San Francisco, California 94080, United States.
Wei HuangMonogram Biosciences , South San Francisco, California 94080, United States.
Nese Kurt-YilmazDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.
Celia A SchifferDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.ORCID 0000-0003-2270-6613
Akbar AliDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School , Worcester, Massachusetts 01605, United States.ORCID 0000-0003-3491-791X
University of Massachusetts Chan Medical School · US

Funding

Drug Resistance in HCV NS3/4A - Inhibitor binding versus substrate recognitionR01AI085051 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2010 to 2019
$4.6M
HCV protease: from atomic mechanism for drug resistance to novel drug designF31GM103259 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SOUMANA, DJADE IBRAHIM · 2013 to 2015
$86k
Fragment-based drug design and substrate envelope model of the Zika virus proteaseF31GM131635 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZEPHYR, JACQUETO · 2019 to 2021
$80k
Structure-based design of robust cross-genotypic NS3/4A protease inhibitors that avoid resistanceF31GM119345 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MATTHEW, ASHLEY NICOLE · 2016 to 2017
$64k
NIAID NIH HHS R01 AI085051NIGMS NIH HHS F31 GM103259NIGMS NIH HHS F31 GM119345NIGMS NIH HHS F31 GM131635
6 · The paper itself

Abstract

A substrate envelope-guided design strategy is reported for improving the resistance profile of HCV NS3/4A protease inhibitors. Analogues of 5172-mcP1P3 were designed by incorporating diverse quinoxalines at the P2 position that predominantly interact with the invariant catalytic triad of the protease. Exploration of structure-activity relationships showed that inhibitors with small hydrophobic substituents at the 3-position of P2 quinoxaline maintain better potency against drug resistant variants, likely due to reduced interactions with residues in the S2 subsite. In contrast, inhibitors with larger groups at this position were highly susceptible to mutations at Arg155, Ala156, and Asp168. Excitingly, several inhibitors exhibited exceptional potency profiles with EC

Indexed as

Antiviral AgentsCrystallography, X-RayDEAD-box RNA HelicasesDrug Resistance, ViralHepacivirusHumansMolecular Docking SimulationMolecular Dynamics SimulationNucleoside-TriphosphataseProtease InhibitorsQuinoxalinesSerine EndopeptidasesStructure-Activity RelationshipViral Nonstructural ProteinsViral ProteasesAntiviral AgentsDEAD-box RNA HelicasesNS3 protein, hepatitis C virusNucleoside-TriphosphataseProtease InhibitorsQuinoxalinesSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases

Identifiers

PMID28594175
PMCPMC5748155
OpenAlexW2623185018

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.