Evidence map›Paper›PMID 28594172›Full record

ArticleJournal of medicinal chemistry2017

Structure-Based Optimization of Pyridoxal 5'-Phosphate-Dependent Transaminase Enzyme (BioA) Inhibitors that Target Biotin Biosynthesis in Mycobacterium tuberculosis.

Feng Liu, Surendra Dawadi, Kimberly M Maize, Ran Dai, Sae Woong Park, Dirk Schnappinger, Barry C Finzel, Courtney C Aldrich

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  11. Journal of enzyme inhibition and medicinal chemistry · 2021
    Article
  12. Article
  13. Tuberculosis Drug Discovery: A Decade of Hit Assessment for Defined Targets.Frontiers in cellular and infection microbiology · 2021
    Review
  14. The primary step of biotin synthesis in mycobacteria.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Review
  17. AFrontiers in microbiology · 2020
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Feng LiuDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Surendra DawadiDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Kimberly M MaizeDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Ran DaiDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Sae Woong ParkDepartment of Microbiology and Immunology, Weill Cornell Medical College , New York, New York 10065, United States.
Dirk SchnappingerDepartment of Microbiology and Immunology, Weill Cornell Medical College , New York, New York 10065, United States.
Barry C FinzelDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.
Courtney C AldrichDepartment of Medicinal Chemistry, University of Minnesota , Minneapolis, Minnesota 55455, United States.ORCID 0000-0001-9261-594X
University of Minnesota · USCornell University · US

Funding

Biotin synthesis and biotin ligation in MtbR01AI091790 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SCHNAPPINGER, DIRK · 2011 to 2015
$3.0M
iTC200 MicroCalorimetry Cell Control UnitS10OD017982 · OD · UNIVERSITY OF MINNESOTA · PI ALDRICH, COURTNEY C · 2014 to 2014
$94k
NIAID NIH HHS R01 AI091790NIH HHS S10 OD017982
6 · The paper itself

Abstract

The pyridoxal 5'-phosphate (PLP)-dependent transaminase BioA catalyzes the second step in the biosynthesis of biotin in Mycobacterium tuberculosis (Mtb) and is an essential enzyme for bacterial survival and persistence in vivo. A promising BioA inhibitor 6 containing an N-aryl, N'-benzoylpiperazine scaffold was previously identified by target-based whole-cell screening. Here, we explore the structure-activity relationships (SAR) through the design, synthesis, and biological evaluation of a systematic series of analogues of the original hit using a structure-based drug design strategy, which was enabled by cocrystallization of several analogues with BioA. To confirm target engagement and discern analogues with off-target activity, each compound was evaluated against wild-type (WT) Mtb in biotin-free and -containing medium as well as BioA under- and overexpressing Mtb strains. Conformationally constrained derivative 36 emerged as the most potent analogue with a K

Indexed as

Anti-Bacterial AgentsBacterial ProteinsBiocatalysisBiotinDose-Response Relationship, DrugMicrobial Sensitivity TestsMolecular StructureMycobacterium tuberculosisPiperazinesPyridoxal PhosphateStructure-Activity RelationshipTransaminasesAnti-Bacterial AgentsBacterial ProteinsBioA protein, bacteriaBiotinPiperazinesPyridoxal PhosphateTransaminases

Identifiers

PMID28594172
PMCPMC5590679
OpenAlexW2621769828

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.