Evidence map›Paper›PMID 28592660›Full record

ArticleJournal of the Royal Society, Interface2017

Mechanical interactions in bacterial colonies and the surfing probability of beneficial mutations.

Fred D Farrell, Matti Gralka, Oskar Hallatschek, Bartlomiej Waclaw

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Morphogenesis of bacterial colonies in liquid crystalline environments.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Age-structured mechanical models for tumor growth.Journal of mathematical biology · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Substrate geometry affects population dynamics in a bacterial biofilm.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Impact of crowding on the diversity of expanding populations.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Mutant-Dependent Local Orientational Correlation in Biofilms ofInternational journal of molecular sciences · 2023
    Article
  14. Article
  15. Morphological instability and roughening of growing 3D bacterial colonies.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Stochastic establishment of β-lactam-resistantProceedings. Biological sciences · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Fred D FarrellLife Sciences, University of Warwick, Coventry CV4 7AL, UK.
Matti GralkaDepartment of Physics, University of California, Berkeley, CA 94720, USA.ORCID 0000-0003-4599-1859
Oskar HallatschekDepartment of Physics, University of California, Berkeley, CA 94720, USA.ORCID 0000-0002-1312-5975
Bartlomiej WaclawSchool of Physics and Astronomy, University of Edinburgh, JCMB, Peter Guthrie Tait Road, Edinburgh EH9 3FD, UK bwaclaw@staffmail.ed.ac.uk.ORCID 0000-0001-5355-7994
University of California, Berkeley · USUniversity of Edinburgh · GBUniversity of Warwick · GB

Funding

Resolving the Mechano-Chemical Regulation of Microbial Populations in Microfluidic DevicesR01GM115851 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HALLATSCHEK, OSKAR · 2015 to 2023
$2.2M
NIGMS NIH HHS R01 GM115851
6 · The paper itself

Abstract

Bacterial conglomerates such as biofilms and microcolonies are ubiquitous in nature and play an important role in industry and medicine. In contrast to well-mixed cultures routinely used in microbial research, bacteria in a microcolony interact mechanically with one another and with the substrate to which they are attached. Here, we use a computer model of a microbial colony of rod-shaped cells to investigate how physical interactions between cells determine their motion in the colony and how this affects biological evolution. We show that the probability that a faster-growing mutant 'surfs' at the colony's frontier and creates a macroscopic sector depends on physical properties of cells (shape, elasticity and friction). Although all these factors contribute to the surfing probability in seemingly different ways, their effects can be summarized by two summary statistics that characterize the front roughness and cell alignment. Our predictions are confirmed by experiments in which we measure the surfing probability for colonies of different front roughness. Our results show that physical interactions between bacterial cells play an important role in biological evolution of new traits, and suggest that these interactions may be relevant to processes such as

Indexed as

Models, BiologicalBiological EvolutionBiomechanical PhenomenaComputer SimulationEscherichia coliGene Expression Regulation, BacterialMovementMutationSaccharomyces cerevisiaeSurface Propertiesbacterial colonybiological evolutioninteractionsroughnesssurfing probability

Identifiers

PMID28592660
PMCPMC5493792
OpenAlexW2572203408

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.