Evidence map›Paper›PMID 28592653›Full record

ArticleG3 (Bethesda, Md.)2017

Approaches in Characterizing Genetic Structure and Mapping in a Rice Multiparental Population.

Chitra Raghavan, Ramil Mauleon, Vanica Lacorte, Monalisa Jubay, Hein Zaw, Justine Bonifacio, Rakesh Kumar Singh, B Emma Huang, Hei Leung

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
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  7. Article
  8. Genome wide association study of MAGIC population reveals a novel QTL for salinity and sodicity tolerance in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
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  14. Review
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  17. Testing PleiotropyG3 (Bethesda, Md.) · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Chitra RaghavanPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Ramil MauleonPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Vanica LacortePlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Monalisa JubayPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Hein ZawPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Justine BonifacioPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
Rakesh Kumar SinghPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines.
B Emma HuangDiscovery Sciences, Janssen R&D, Menlo Park, California 94025.
Hei LeungPlant Breeding, Genetics and Biotechnology Division, International Rice Research Institute, Manila 1301, Philippines h.leung@irri.org.
International Rice Research Institute · PHJanssen (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Multi-parent Advanced Generation Intercross (MAGIC) populations are fast becoming mainstream tools for research and breeding, along with the technology and tools for analysis. This paper demonstrates the analysis of a rice MAGIC population from data filtering to imputation and processing of genetic data to characterizing genomic structure, and finally quantitative trait loci (QTL) mapping. In this study, 1316 S6:8

Indexed as

Chromosome MappingGenome, PlantGenomicsQuantitative Trait LociBreedingComputational BiologyFounder EffectGenetics, PopulationGenome-Wide Association StudyGenotypeHaplotypesOryzaPhenotypeQuantitative Trait, HeritableRecombination, GeneticimputationMPPmultiparental populationsQTL mappingrecombination

Identifiers

PMID28592653
PMCPMC5473752
OpenAlexW2727856095

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.