Evidence map›Paper›PMID 28592545›Full record

ArticleJournal of clinical microbiology2017

Development of a Web Tool for Escherichia coli Subtyping Based on

Louise Roer, Veronika Tchesnokova, Rosa Allesøe, Mariya Muradova, Sujay Chattopadhyay, Johanne Ahrenfeldt, Martin C F Thomsen, Ole Lund, Frank Hansen, Anette M Hammerum and 2 more

Abstract readValidation Study
In one paragraph

Article in Journal of clinical microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.

0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

142 citing papers in PubMed.

  1. Article
  2. Draft genome sequence of multidrug-resistantMicrobiology resource announcements · 2026
    Article
  3. Escherichia coli ST131 Drives Carbapenem Use for E. coli Bloodstream Infections.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  4. Clonally relatedASM case reports · 2026
    Article
  5. Article
  6. Genomic Characterization of Selected Multidrug-ResistantAnimals : an open access journal from MDPI · 2026
    Article
  7. Emerging Dissemination of blaMicrobiologyOpen · 2026
    Article
  8. Detection of amoxicillin-resistant and multidrug-resistantMicrobiology (Reading, England) · 2026
    Article
  9. Article
  10. Article
  11. Draft genome sequence of multidrug-resistantMicrobiology resource announcements · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genomic Characteristics of a Carbapenem-ResistantInfection and drug resistance · 2026
    Article
  19. Article
  20. Genomic profiling of ESBL/AmpC-producingFrontiers in microbiology · 2026
    Article

82 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Louise RoerDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark loro@ssi.dk.
Veronika TchesnokovaDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Rosa AllesøeDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
Mariya MuradovaDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Sujay ChattopadhyayDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Johanne AhrenfeldtDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
Martin C F ThomsenDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
Ole LundDepartment of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark.
Frank HansenDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.
Anette M HammerumDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.
Evgeni SokurenkoDepartment of Microbiology, University of Washington, Seattle, Washington, USA.
Henrik HasmanDepartment of Bacteria, Parasites and Fungi, Statens Serum Institut, Copenhagen, Denmark.

Funding

Molecular Clonality of Uropathogenic E. ColiR01AI106007 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2014 to 2024
$7.5M
NIAID NIH HHS R01 AI106007
6 · The paper itself

Abstract

The aim of this study was to construct a valid publicly available method for

Indexed as

AllelesInternetAdhesins, Escherichia coliEscherichia coliFimbriae ProteinsMolecular TypingSoftwareAdhesins, Escherichia coliFimbriae ProteinsfimH protein, E coliEscherichia colifimHtypingwhole-genome sequencing analysis

Identifiers

PMID28592545
PMCPMC5527432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.