Evidence map›Paper›PMID 28592496›Full record

ArticleGenetics2017

Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross.

John R Shorter, Fanny Odet, David L Aylor, Wenqi Pan, Chia-Yu Kao, Chen-Ping Fu, Andrew P Morgan, Seth Greenstein, Timothy A Bell, Alicia M Stevans and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Article
  3. Do genetic loci that cause reproductive isolation in the lab inhibit gene flow in nature?Evolution; international journal of organic evolution · 2024
    Article
  4. Article
  5. Large differences in collateral blood vessel abundance among individuals arise from multiple genetic variants.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2023
    Article
  6. Article
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  12. Article
  13. Review
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  18. Article
  19. Article
  20. Population Selection and Sequencing ofG3 (Bethesda, Md.) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

John R ShorterDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.ORCID 0000-0003-4732-5526
Fanny OdetDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
David L AylorDepartment of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695.
Wenqi PanDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Chia-Yu KaoDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Chen-Ping FuDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Andrew P MorganDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
Seth GreensteinDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Timothy A BellDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
Alicia M StevansDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Ryan W FeathersDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Sunny PatelDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599.
Sarah E CatesDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
Ginger D ShawDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.
Darla R MillerDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599.ORCID 0000-0002-0781-7254
Elissa J CheslerThe Jackson Laboratory, Bar Harbor, Maine 04609.ORCID 0000-0002-5642-5062
Leonard McMillianDepartment of Computer Science, University of North Carolina, Chapel Hill, North Carolina 27599.
Deborah A O'BrienDepartment of Cell Biology and Physiology, University of North Carolina, Chapel Hill, North Carolina 27599 Fernando@med.unc.edu dao@med.unc.edu.
Fernando Pardo-Manuel de VillenaDepartment of Genetics, University of North Carolina, Chapel Hill, North Carolina 27599 Fernando@med.unc.edu dao@med.unc.edu.ORCID 0000-0002-5738-5795
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer CenterJackson Laboratory · US

Funding

Unlocking Zika Virus Immune Control and Pathogenesis with the Collaborative CrossU19AI100625 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PARDO-MANUEL DE VILLENA, FERNANDO · 2012 to 2021
$36.6M
Discovery of Addiction-Related Genes with Advanced Mouse ResourcesR01DA037927 · NIDA · JACKSON LABORATORY · PI CHESLER, ELISSA J · 2015 to 2025
$8.1M
Collaborative Cross: A system genetics approach to the study of male infertilityR01HD065024 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI O'BRIEN, DEBORAH A., PARDO-MANUEL DE VILLENA, FERNANDO · 2010 to 2014
$1.7M
Effects of advanced paternal age on germline genome stabilityF30MH103925 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MORGAN, ANDREW PARKER · 2014 to 2017
$151k
System Genetics of Male Infertility in the Collaborative CrossF32GM090667 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AYLOR, DAVID LAWRENCE · 2010 to 2011
$96k
NIAID NIH HHS U19 AI100625NICHD NIH HHS R01 HD065024NIDA NIH HHS R01 DA037927NIGMS NIH HHS F32 GM090667NIMH NIH HHS F30 MH103925
6 · The paper itself

Abstract

The goal of the Collaborative Cross (CC) project was to generate and distribute over 1000 independent mouse recombinant inbred strains derived from eight inbred founders. With inbreeding nearly complete, we estimated the extinction rate among CC lines at a remarkable 95%, which is substantially higher than in the derivation of other mouse recombinant inbred populations. Here, we report genome-wide allele frequencies in 347 extinct CC lines. Contrary to expectations, autosomes had equal allelic contributions from the eight founders, but chromosome

Indexed as

AllelesAnimalsChromosome MappingChromosomesCrosses, GeneticFemaleHaplotypesInbreedingInfertility, MaleMaleMiceMice, Inbred StrainsPhenotypeQuantitative Trait LociReproductionSperm Motilityinfertilityline extinctionmouseMPPmultiparental populationsQTL mappingsperm motility

Identifiers

PMID28592496
PMCPMC5499172
OpenAlexW2621775737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.