Evidence map›Paper›PMID 28592485›Full record

ArticleThe Journal of biological chemistry2017

Energetics of side-chain partitioning of β-signal residues in unassisted folding of a transmembrane β-barrel protein.

Bharat Ramasubramanian Iyer, Punit Zadafiya, Pallavi Vijay Vetal, Radhakrishnan Mahalakshmi

Abstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Engineering a HyperstableJournal of the American Chemical Society · 2022
    Article
  3. GeTFEP: A general transfer free energy profile of transmembrane proteins.Protein science : a publication of the Protein Society · 2020
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Transmembrane β-barrels: Evolution, folding and energetics.Biochimica et biophysica acta. Biomembranes · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Bharat Ramasubramanian IyerMolecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal 462066, India.
Punit ZadafiyaMolecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal 462066, India.
Pallavi Vijay VetalMolecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal 462066, India.
Radhakrishnan MahalakshmiMolecular Biophysics Laboratory, Department of Biological Sciences, Indian Institute of Science Education and Research, Bhauri, Bhopal 462066, India. Electronic address: maha@iiserb.ac.in.

Funding

DBT-Wellcome Trust India Alliance IA/I/14/1/501305Wellcome Trust
6 · The paper itself

Abstract

The free energy of water-to-interface amino acid partitioning is a major contributing factor in membrane protein folding and stability. The interface residues at the C terminus of transmembrane β-barrels form the β-signal motif required for assisted β-barrel assembly

Indexed as

Models, MolecularAcyltransferasesAmino Acid MotifsAmino AcidsEnergy TransferEnzyme StabilityEscherichia coli K12Escherichia coli ProteinsGene DeletionHydrophobic and Hydrophilic InteractionsLipid BilayersMicellesMolecular Dynamics SimulationPhosphatidylcholinesPhosphorylcholineProtein Conformation, beta-Strand1,2-dilauroylphosphatidylcholineAcyltransferasesAmino AcidsdodecylphosphocholineEscherichia coli ProteinsLipid BilayersMicellesPagP protein, E coliPhosphatidylcholinesPhosphorylcholineaccessible surfaceenergeticshydrophobicitymembrane biophysicsmembrane interfacemembrane proteinouter membranepartitioning energyprotein foldingthermodynamics

Identifiers

PMID28592485
PMCPMC5519381

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.