Evidence map›Paper›PMID 28592326›Full record

ArticleGenome medicine2017

The genomic road to invasion-examining the similarities and differences in the genomes of associated oral pre-cancer and cancer samples.

Henry M Wood, Catherine Daly, Rebecca Chalkley, Burcu Senguven, Lisa Ross, Philip Egan, Preetha Chengot, Jennifer Graham, Neeraj Sethi, Thian K Ong and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genome medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 50 citations in OpenAlex.

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  15. European Laryngological Society position paper on laryngeal dysplasia Part I: aetiology and pathological classification.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2021
    Review
  16. Immune evasion in HPVProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Henry M WoodLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK. h.m.wood@leeds.ac.uk.
Catherine DalyLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Rebecca ChalkleyLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Burcu SenguvenLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Lisa RossLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Philip EganLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Preetha ChengotSt James's Institute of Oncology, St James's University Hospital, Leeds, LS9 7TF, UK.
Jennifer GrahamSt James's Institute of Oncology, St James's University Hospital, Leeds, LS9 7TF, UK.
Neeraj SethiLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Thian K OngLeeds Dental Institute, Leeds General Infirmary, Leeds, LS2 9LU, UK.
Kenneth MacLennanLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Pamela RabbittsLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
Caroline ConwayLeeds Institute of Cancer and Pathology, University of Leeds, Leeds, LS9 7TF, UK.
University of Leeds · GBSt James's University Hospital · GBGazi University · TRLeeds General Infirmary · GBUniversity of Ulster · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIt is frequently assumed that pre-invasive lesions are simpler precursors of cancer and will contain a limited subset of the genomic changes seen in their associated invasive disease. Driver mutations are thought to occur early, but it is not known how many of these are present in pre-invasive lesions. These assumptions need to be tested with the increasing focus on both personalised cancer treatments and early detection methodologies.

methodsWe examined genomic copy number changes in 256 pre-invasive and invasive samples from 69 oral cancer patients. Forty-eight samples from 16 patients were further examined using exome sequencing.

resultsEvidence of a shared ancestor of both dysplasia and carcinoma was seen in all but one patient. One-third of dysplasias showed independent copy number events. The remainder had a copy number pattern that was similar to or simpler than that of the carcinoma. All dysplasias examined contained somatic mutations absent in the related carcinoma. Previously observed copy number changes and TP53 mutations were very frequently observed, and almost always shared between dysplasia and carcinoma. Other gene changes were more sporadic. Pathway analysis confirmed that each patient's disease developed in a different way. Examining the numbers of shared mutations and the rate of accumulation of mutations showed evidence that all samples contain a population of sub-clones, with little evidence of selective advantage of a subset of these.

conclusionsThese findings suggest that most of the genomic changes driving oral cancer occur in the pre-cancerous state by way of gradual random accumulation rather than a dramatic single event.

Indexed as

DNA Copy Number VariationsMutationCarcinomaDisease ProgressionExomeGenes, NeoplasmGenomicsHumansMouth NeoplasmsNeoplasm InvasivenessSequence Analysis, DNAOral cancerPre-cancerTumour progression

Identifiers

PMID28592326
PMCPMC5461742
OpenAlexW2623501359

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.