Evidence map›Paper›PMID 28591715›Full record

ArticleOncotarget2017

BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations.

Safoora Deihimi, Avital Lev, Michael Slifker, Elena Shagisultanova, Qifang Xu, Kyungsuk Jung, Namrata Vijayvergia, Eric A Ross, Joanne Xiu, Jeffrey Swensen and 4 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Coexisting germline variants ofInternational cancer conference journal · 2025
    Article
  3. Review
  4. Article
  5. Review
  6. Characteristic mutations induced in the small intestine of Msh2-knockout gpt delta mice.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  7. Article
  8. Article
  9. Tropomyosin receptor kinase (TRK) biology and the role of NTRK gene fusions in cancer.Annals of oncology : official journal of the European Society for Medical Oncology · 2019
    Review
  10. Germline cancer susceptibility gene variants, somatic second hits, and survival outcomes in patients with resected pancreatic cancer.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Safoora DeihimiLaboratory of Translational Oncology and Experimental Cancer Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, USA.
Avital LevLaboratory of Translational Oncology and Experimental Cancer Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, USA.
Michael SlifkerBiostatistics and Bioinformatics Department, Fox Chase Cancer Center, Philadelphia, PA, USA.
Elena ShagisultanovaDepartment of Hematology/Oncology, Fox Chase Cancer Center, Philadelphia, PA, USA.
Qifang XuMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
Kyungsuk JungDepartment of Medicine, Fox Chase Cancer Center, Philadelphia, PA, USA.
Namrata VijayvergiaDepartment of Hematology/Oncology, Fox Chase Cancer Center, Philadelphia, PA, USA.
Eric A RossBiostatistics and Bioinformatics Department, Fox Chase Cancer Center, Philadelphia, PA, USA.
Joanne XiuCaris Life Science, Phoenix, AZ, USA.
Jeffrey SwensenCaris Life Science, Phoenix, AZ, USA.
Zoran GatalicaCaris Life Science, Phoenix, AZ, USA.
Mark AndrakeMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
Roland L DunbrackMolecular Therapeutics Program, Fox Chase Cancer Center, Philadelphia, PA, USA.
Wafik S El-DeiryLaboratory of Translational Oncology and Experimental Cancer Therapeutics, Fox Chase Cancer Center, Philadelphia, PA, USA.
Fox Chase Cancer Center · USCaris Life Sciences (United States) · USDrexel University · USUniversity of Colorado Denver · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Dietmar J Kappes · 1985 to 2026
$138.8M
Structural Bioinformatics of Proteins and Protein Complexes and Applications to Cancer BiologyR35GM122517 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI ROLAND L DUNBRACK · 2017 to 2026
$6.3M
Bayesian Statistics and Algorithms for Homology ModelingR01GM084453 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2008 to 2016
$2.6M
NCI NIH HHS P30 CA006927NIGMS NIH HHS R01 GM084453NIGMS NIH HHS R35 GM122517
6 · The paper itself

Abstract

Deficient mismatch repair (MMR) and microsatellite instability (MSI) contribute to ~15% of colorectal cancer (CRCs). We hypothesized MSI leads to mutations in DNA repair proteins including BRCA2 and cancer drivers including EGFR. We analyzed mutations among a discovery cohort of 26 MSI-High (MSI-H) and 558 non-MSI-H CRCs profiled at Caris Life Sciences. Caris-profiled MSI-H CRCs had high mutation rates (50% vs 14% in non-MSI-H, P < 0.0001) in BRCA2. Of 1104 profiled CRCs from a second cohort (COSMIC), MSH2/MLH1-mutant CRCs showed higher mutation rates in BRCA2 compared to non-MSH2/MLH1-mutant tumors (38% vs 6%, P < 0.0000001). BRCA2 mutations in MSH2/MLH1-mutant CRCs included 75 unique mutations not known to occur in breast or pancreatic cancer per COSMIC v73. Only 5 deleterious BRCA2 mutations in CRC were previously reported in the BIC database as germ-line mutations in breast cancer. Some BRCA2 mutations were predicted to disrupt interactions with partner proteins DSS1 and RAD51. Some CRCs harbored multiple BRCA2 mutations. EGFR was mutated in 45.5% of MSH2/MLH1-mutant and 6.5% of non-MSH2/MLH1-mutant tumors (P < 0.0000001). Approximately 15% of EGFR mutations found may be actionable through TKI therapy, including N700D, G719D, T725M, T790M, and E884K. NTRK gene mutations were identified in MSH2/MLH1-mutant CRC including NTRK1 I699V, NTRK2 P716S, and NTRK3 R745L. Our findings have clinical relevance regarding therapeutic targeting of BRCA2 vulnerabilities, EGFR mutations or other identified oncogenic drivers such as NTRK in MSH2/MLH1-mutant CRCs or other tumors with mismatch repair deficiency.

Indexed as

MutationBRCA2 ProteinCohort StudiesColorectal NeoplasmsDNA Mismatch RepairErbB ReceptorsGene FrequencyHumansMicrosatellite InstabilityModels, MolecularMutL Protein Homolog 1MutS Homolog 2 ProteinProtein DomainsReceptor, trkAReceptor, trkBReceptor, trkCBRCA2 ProteinBRCA2 protein, humanEGFR protein, humanErbB ReceptorsMLH1 protein, humanMSH2 protein, humanMutL Protein Homolog 1MutS Homolog 2 ProteinReceptor, trkAReceptor, trkBReceptor, trkCBRCA2colorectal cancerEGFRMLH1NTRK

Identifiers

PMID28591715
PMCPMC5522275
OpenAlexW2619892604

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.