Evidence map›Paper›PMID 28590247›Full record

ArticleeLife2017

Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates.

Zachary Baker, Molly Schumer, Yuki Haba, Lisa Bashkirova, Chris Holland, Gil G Rosenthal, Molly Przeworski

Open access · goldAbstract read
In one paragraph

Article in eLife, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 159 citations in OpenAlex.

  1. Article
  2. On the origin of PRDM9-guided recombination hotspots.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Evolution of genome-wide barriers to gene flow during complex speciation in rattlesnakes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Why recombination hotspots?PLoS genetics · 2026
    Review
  5. Review
  6. Meiotic Recombination in Teleosts.Advances in experimental medicine and biology · 2026
    Review
  7. Review
  8. Review
  9. Article
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  11. Article
  12. Article
  13. Review
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41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Zachary BakerDepartment of Systems Biology, Columbia University, New York City, United States.ORCID 0000-0002-1540-0731
Molly SchumerDepartment of Biological Sciences, Columbia University, New York City, United States.ORCID 0000-0002-2075-5668
Yuki HabaDepartment of Evolution, Ecology and Environmental Biology, Columbia University, New York City, United States.
Lisa BashkirovaDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York City, United States.
Chris HollandCentro de Investigaciones Científicas de las Huastecas 'Aguazarca', Hidalgo, Mexico.
Gil G RosenthalCentro de Investigaciones Científicas de las Huastecas 'Aguazarca', Hidalgo, Mexico.
Molly PrzeworskiDepartment of Systems Biology, Columbia University, New York City, United States.ORCID 0000-0002-5369-9009
Columbia University · USCentro de Investigaciones Cientifícas de las Huastecas 'Aguazarca' · MXCity University of Seattle · USHarvard University Press · US

Funding

TRAINING IN CELLULAR, MOLECULAR AND BIOPHYSICAL STUDIEST32GM008224 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI LIEM, RONALD K. · 1987 to 2021
$9.9M
Recombination rate variation and evolution in vertebratesR01GM083098 · NIGMS · UNIVERSITY OF CHICAGO · PI PRZEWORSKI, MOLLY F · 2007 to 2024
$4.6M
NIGMS NIH HHS R01 GM083098NIGMS NIH HHS T32 GM008224
6 · The paper itself

Abstract

Studies of highly diverged species have revealed two mechanisms by which meiotic recombination is directed to the genome-through PRDM9 binding or by targeting promoter-like features-that lead to dramatically different evolutionary dynamics of hotspots. Here, we identify PRDM9 orthologs from genome and transcriptome data in 225 species. We find the complete PRDM9 ortholog across distantly related vertebrates but, despite this broad conservation, infer a minimum of six partial and three complete losses. Strikingly, taxa carrying the complete ortholog of PRDM9 are precisely those with rapid evolution of its predicted binding affinity, suggesting that all domains are necessary for directing recombination. Indeed, as we show, swordtail fish carrying only a partial but conserved ortholog share recombination properties with PRDM9 knock-outs.

Indexed as

Evolution, MolecularAnimalsHistone-Lysine N-MethyltransferaseRecombination, GeneticVertebratesHistone-Lysine N-Methyltransferaseevolutionary biologygenomicsHotspotMeiosisPRDM9RecombinationVertebratesXiphophorus

Identifiers

PMID28590247
PMCPMC5519329
OpenAlexW2952421220

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.