Evidence map›Paper›PMID 28590138›Full record

ArticleInorganic chemistry2017

Vibrational Probes of Molybdenum Cofactor-Protein Interactions in Xanthine Dehydrogenase.

Chao Dong, Jing Yang, Stefan Reschke, Silke Leimkühler, Martin L Kirk

Open access · greenAbstract read
In one paragraph

Article in Inorganic chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Chao DongDepartment of Chemistry and Chemical Biology, The University of New Mexico , MSC03 2060, 1 University of New Mexico, Albuquerque, New Mexico 87131-0001, United States.
Jing YangDepartment of Chemistry and Chemical Biology, The University of New Mexico , MSC03 2060, 1 University of New Mexico, Albuquerque, New Mexico 87131-0001, United States.
Stefan ReschkeInstitute of Biochemistry and Biology, Department of Molecular Enzymology, University of Potsdam , 14476 Potsdam, Germany.
Silke LeimkühlerInstitute of Biochemistry and Biology, Department of Molecular Enzymology, University of Potsdam , 14476 Potsdam, Germany.ORCID http://orcid.org/0000-0003-3238-2122
Martin L KirkDepartment of Chemistry and Chemical Biology, The University of New Mexico , MSC03 2060, 1 University of New Mexico, Albuquerque, New Mexico 87131-0001, United States.ORCID http://orcid.org/0000-0002-1479-3318
University of New Mexico · USUniversity of Potsdam · DE

Funding

Spectroscopic Studies of Molybdoenzymes & ModelsR01GM057378 · NIGMS · UNIVERSITY OF NEW MEXICO · PI MARTIN L KIRK · 1998 to 2026
$6.9M
NIGMS NIH HHS R01 GM057378
6 · The paper itself

Abstract

The pyranopterin dithiolene (PDT) ligand is an integral component of the molybdenum cofactor (Moco) found in all molybdoenzymes with the sole exception of nitrogenase. However, the roles of the PDT in catalysis are still unknown. The PDT is believed to be bound to the proteins by an extensive hydrogen-bonding network, and it has been suggested that these interactions may function to fine-tune Moco for electron- and atom-transfer reactivity in catalysis. Here, we use resonance Raman (rR) spectroscopy to probe Moco-protein interactions using heavy-atom congeners of lumazine, molecules that bind tightly to both wild-type xanthine dehydrogenase (wt-XDH) and its Q102G and Q197A variants following enzymatic hydroxylation to the corresponding violapterin product molecules. The resulting enzyme-product complexes possess intense near-IR absorption, allowing high-quality rR spectra to be collected on wt-XDH and the Q102G and Q197A variants. Small negative frequency shifts relative to wt-XDH are observed for the low-frequency Moco vibrations. These results are interpreted in the context of weak hydrogen-bonding and/or electrostatic interactions between Q102 and the -NH

Indexed as

VibrationCoenzymesHydrogen BondingMetalloproteinsMolecular ConformationMolecular ProbesMolybdenum CofactorsPteridinesPterinsQuantum TheorySpectrophotometry, UltravioletSpectrum Analysis, RamanSulfhydryl CompoundsXanthine DehydrogenaseCoenzymesMetalloproteinsMolecular ProbesMolybdenum CofactorsmolybdopterinPteridinesPterinspyranopterinSulfhydryl CompoundsXanthine Dehydrogenase

Identifiers

PMID28590138
PMCPMC7909741
OpenAlexW2622024150

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.