Evidence map›Paper›PMID 28587830›Full record

ReviewTrends in molecular medicine2017

Early Detection of Cancer in Blood Using Single-Cell Analysis: A Proposal.

Alexander Krasnitz, Jude Kendall, Joan Alexander, Dan Levy, Michael Wigler

Abstract readReview
In one paragraph

Review in Trends in molecular medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexander KrasnitzCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Jude KendallCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Joan AlexanderCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Dan LevyCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Michael WiglerCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA. Electronic address: wigler@cshl.edu.
Cold Spring Harbor Laboratory · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
Multiparameter single-cell genomics platform for personalized treatment of cancerR01CA181595 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI BROUZES, ERIC · 2014 to 2018
$2.7M
Computational Framework for Single-Cell Genomics of TumorsU01CA188590 · NCI · COLD SPRING HARBOR LABORATORY · PI KRASNITZ, ALEXANDER, WIGLER, MICHAEL H · 2015 to 2017
$934k
NCI NIH HHS P30 CA045508NCI NIH HHS R01 CA181595NCI NIH HHS U01 CA188590
6 · The paper itself

Abstract

Here, we explore the potential of single-cell genomic analysis in blood for early detection of cancer; we consider a method that screens the presence of recurrent patterns of copy number (CN) alterations using sparse single-cell sequencing. We argue for feasibility, based on in silico analysis of existing single-cell data and cancer CN profiles. Sampling procedures from existing diploid single cells can render data for a cell with any given profile. Sampling from multiple published tumor profiles can interrogate cancer clonality via an algorithm that tests the multiplicity of close pairwise similarities among single-cell cancer genomes. The majority of common solid cancers would be detectable in this manner. As any early detection method must be verifiable and actionable, we describe how further analysis of suspect cells can aid in determining risk and anatomic origin. Future affordability rests on currently available procedures for tumor cell enrichment and inexpensive methods for single-cell analysis.

Indexed as

Computer SimulationGene DosageGenome, HumanNeoplasmsAnimalsHumanscancercirculating tumor cellsearly detectionsingle-cell analysis

Identifiers

PMID28587830
PMCPMC5502711
OpenAlexW2621041609

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.