ArticleThe ISME journal2017
Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits.
Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 158 papers.
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Who cites it
158 citing papers in PubMed.
- Consistent root microbiomes across contrasting habitats in a wild perennial vine.Plant biology (Stuttgart, Germany) · 2026Article
- Unveiling Potato Cultivars With Microbiome Interactive Traits for Sustainable Agricultural Production.Plant, cell & environment · 2026Article
- Domestication Enhances the Plastic Response of Root Economic Traits to Soil Variation in the Perennial CropPlants (Basel, Switzerland) · 2026Article
- Differences in rhizosphere microbial communities betweenMicrobiology spectrum · 2026Article
- Review
- Isolation, Identification, and Diversity Analysis of Endophytic Fungi from Sweetpotato.Journal of fungi (Basel, Switzerland) · 2026Article
- The root rhizosphere as a functional analog to the gut microbiome: Cases for microbial symbiosis and dysbiosis in parallel contexts.PNAS nexus · 2026Review
- Plant Development Shapes the Rhizosphere Microbiota Assembly ofMicroorganisms · 2026Article
- Evaluating the legacy of drought exposure on root and rhizosphere bacterial microbiomes over two plant generations.Microbiology spectrum · 2026Article
- Rhizosphere and endophytic bacterial communities of the endangered alpine modest primrose and their plant growth-promoting potential.Scientific reports · 2026Article
- Cross-niche metabolite-microbiome interactions orchestrate systemic soybean resistance to Fusarium root rot.The ISME journal · 2026Article
- Phylogenetic Divergence and Domestication Jointly Shape the Tomato Root Microbiome.Plants (Basel, Switzerland) · 2026Article
- Root triterpenoid metabolites drive the assembly and feedback regulation of the rhizosphere microbiome during flowering to senescence inFrontiers in microbiology · 2026Article
- Digging for meaningful connections: associations between root phenotypes and rhizosphere microbial diversity in maize.Plant and soil · 2026Article
- Root traits correlate with crop rhizosphere microbiome diversity independent of legume relatedness.ISME communications · 2026Article
- Genotype-specific root morphology and metabolic traits shape bacterial communities and tolerance to Fusarium root rot in wheat.PloS one · 2026Article
- Functional and taxonomic shifts in rhizosphere microbiomes of summer legume cover crops.Frontiers in plant science · 2026Article
- A global soil plasmidome resource unveils functional and ecological roles of plasmids in soil microbiomes.Nature communications · 2025Article
- Reconstructing the evolutionary history of herbaceous crops through trait-based ecology.American journal of botany · 2025Review
- Effect of Bacillus velezensis on the structure of the rhizosphere microbial community and yield of soybean.BMC plant biology · 2025Article
98 more citing papers are in PubMed but not listed here.
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant domestication was a pivotal accomplishment in human history, but also led to a reduction in genetic diversity of crop species compared to their wild ancestors. How this reduced genetic diversity affected plant-microbe interactions belowground is largely unknown. Here, we investigated the genetic relatedness, root phenotypic traits and rhizobacterial community composition of modern and wild accessions of common bean (Phaseolus vulgaris) grown in agricultural soil from the highlands of Colombia, one of the centers of common bean diversification. Diversity Array Technology-based genotyping and phenotyping of local common bean accessions showed significant genetic and root architectural differences between wild and modern accessions, with a higher specific root length for the wild accessions. Canonical Correspondence Analysis indicated that the divergence in rhizobacterial community composition between wild and modern bean accessions is associated with differences in specific root length. Along the bean genotypic trajectory, going from wild to modern, we observed a gradual decrease in relative abundance of Bacteroidetes, mainly Chitinophagaceae and Cytophagaceae, and an increase in relative abundance of Actinobacteria and Proteobacteria, in particular Nocardioidaceae and Rhizobiaceae, respectively. Collectively, these results establish a link between common bean domestication, specific root morphological traits and rhizobacterial community assembly.
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