Evidence map›Paper›PMID 28584448›Full record

ArticleBioinformation2017

Identification and characterization of a cyclosporin binding cyclophilin from Staphylococcus aureus Newman.

Soumitra Polley, Soham Seal, Avisek Mahapa, Biswanath Jana, Anindya Biswas, Sukhendu Mandal, Debabrata Sinha, Keya Sau, Subrata Sau

Open access · hybridAbstract read
In one paragraph

Article in Bioinformation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Soumitra PolleyDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Soham SealDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Avisek MahapaDepartment of Biotechnology, Haldia Institute of Technology, Haldia, West Bengal, India.
Biswanath JanaDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Anindya BiswasDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Sukhendu MandalDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Debabrata SinhaDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Keya SauDepartment of Biotechnology, Haldia Institute of Technology, Haldia, West Bengal, India.
Subrata SauDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Bose Institute · INHaldia Institute of Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cyclophilins, a class of peptidyl-prolyl cis-trans isomerase (PPIase) enzymes, are inhibited by cyclosporin A (CsA), an immunosuppressive drug. Staphylococcus aureus Newman, a pathogenic bacterium, carries a gene for encoding a putative cyclophilin (SaCyp). SaCyp shows significant homology with other cyclophilins at the sequence level. A three-dimensional model structure of SaCyp harbors a binding site for CsA. To verify whether SaCyp possesses both the PPIase activity and the CsA binding ability, we have purified and investigated a recombinant SaCyp (rCyp) using various in vitro tools. Our RNase T1 refolding assay indicates that rCyp has a substantial extent of PPIase activity. rCyp that exists as a monomer in the aqueous solution is truly a cyclophilin as its catalytic activity specifically shows sensitivity to CsA. rCyp appears to bind CsA with a reasonably high affinity. Additional investigations reveal that binding of CsA to rCyp alters its structure and shape to some extent. Both rCyp and rCyp-CsA are unfolded via the formation of at least one intermediate in the presence of guanidine hydrochloride. Unfolding study also indicates that there is substantial extent of thermodynamic stabilization of rCyp in the presence of CsA as well. The data suggest that rCyp may be exploited to screen the new antimicrobial agents in the future.

Indexed as

cyclophilincyclosporin AGdnClintermediatestabilityStaphylococcus aureusunfolding

Identifiers

PMID28584448
PMCPMC5450249
OpenAlexW2607288321

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.