Evidence map›Paper›PMID 28584275›Full record

ArticleScientific reports2017

Physiological characteristics of Magnetospirillum gryphiswaldense MSR-1 that control cell growth under high-iron and low-oxygen conditions.

Qing Wang, Xu Wang, Weijia Zhang, Xianyu Li, Yuan Zhou, Dan Li, Yinjia Wang, Jiesheng Tian, Wei Jiang, Ziding Zhang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Qing WangState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Xu WangState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Weijia ZhangInstitute of Deep-sea Science and Engineering, China Academy of Sciences, Sanya, 572000, P.R. China.
Xianyu LiBeijing Key Laboratory of Traditional Chinese Medicine Basic Research on Prevention and Treatment for Major Diseases, Experimental Research Center, China Academy of Chinese Medical Sciences, Beijing, 100700, P.R. China.
Yuan ZhouState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Dan LiState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Yinjia WangTianjin Biochip Corporation, Tianjin, 300457, P.R. China.
Jiesheng TianState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Wei JiangState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Ziding ZhangState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.ORCID 0000-0002-9296-571X
Youliang PengState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Lei WangTianjin Biochip Corporation, Tianjin, 300457, P.R. China.
Ying LiState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China. yingli528@vip.sina.com.
Jilun LiState Key Laboratories for Agro-biotechnology, China Agricultural University, Beijing, 100193, P.R. China.
Beijing Institute of Geology for Mineral Resources · CNChina Agricultural University · CNBeijing Biocytogen (China) · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Magnetosome formation by Magnetospirillum gryphiswaldense MSR-1 is dependent on iron and oxygen levels. We used transcriptome to evaluate transcriptional profiles of magnetic and non-magnetic MSR-1 cells cultured under high-iron and low-iron conditions. A total of 80 differentially expressed genes (DEGs) were identified, including 53 upregulated and 27 downregulated under high-iron condition. These DEGs belonged to the functional categories of biological regulation, oxidation-reduction process, and ion binding and transport, and were involved in sulfur metabolism and cysteine/methionine metabolism. Comparison with our previous results from transcriptome data under oxygen-controlled conditions indicated that transcription of mam or mms was not regulated by oxygen or iron signals. 17 common DEGs in iron- and oxygen-transcriptomes were involved in energy production, iron transport, and iron metabolism. Some unknown-function DEGs participate in iron transport and metabolism, and some are potential biomarkers for identification of Magnetospirillum strains. IrrA and IrrB regulate iron transport in response to low-oxygen and high-iron signals, respectively. Six transcription factors were predicted to regulate DEGs. Fur and Crp particularly co-regulate DEGs in response to changes in iron or oxygen levels, in a proposed joint regulatory network of DEGs. Our findings provide new insights into biomineralization processes under high- vs. low-iron conditions in magnetotactic bacteria.

Indexed as

Gene Expression ProfilingGene Expression Regulation, BacterialIronMagnetic FieldsMagnetosomesMagnetospirillumMultigene FamilyOxygenIronOxygen

Identifiers

PMID28584275
PMCPMC5459824
OpenAlexW2618436858

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.