Evidence map›Paper›PMID 28584122›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

An Exportin-1-dependent microRNA biogenesis pathway during human cell quiescence.

Ivan Martinez, Karen E Hayes, Jamie A Barr, Abby D Harold, Mingyi Xie, Syed I A Bukhari, Shobha Vasudevan, Joan A Steitz, Daniel DiMaio

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
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  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Application of Mammalian Nudix Enzymes to Capped RNA Analysis.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  10. Potential Use of MicroRNA Technology in Thalassemia Therapy.Journal of clinical medicine research · 2024
    Review
  11. Review
  12. Regulatory role of RNA-binding proteins in microRNA biogenesis.Frontiers in molecular biosciences · 2024
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. CD47 interactions with exportin-1 limit the targeting of mJournal of cell communication and signaling · 2022
    Article
  18. Spotting the Targets of the Apospory ControllerPlants (Basel, Switzerland) · 2022
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Ivan MartinezDepartment of Microbiology, West Virginia University Cancer Institute, West Virginia University, Morgantown, WV 26506; ivmartinez@hsc.wvu.edu joan.steitz@yale.edu.
Karen E HayesDepartment of Microbiology, West Virginia University Cancer Institute, West Virginia University, Morgantown, WV 26506.
Jamie A BarrDepartment of Microbiology, West Virginia University Cancer Institute, West Virginia University, Morgantown, WV 26506.
Abby D HaroldDepartment of Microbiology, West Virginia University Cancer Institute, West Virginia University, Morgantown, WV 26506.
Mingyi XieDepartment of Biochemistry and Molecular Biology, University of Florida Health Cancer Center, University of Florida, Gainesville, FL 32610.
Syed I A BukhariCancer Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114.
Shobha VasudevanCancer Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114.
Joan A SteitzDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06536; ivmartinez@hsc.wvu.edu joan.steitz@yale.edu.
Daniel DiMaioDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06536.
West Virginia University · USMassachusetts General Hospital · USUniversity of Florida Health · USYale Cancer Center · USYale University · US

Funding

VIRAL SMALL RNPS--ROLES IN CELL TRANSFORMATIONP01CA016038 · NCI · YALE UNIVERSITY · PI DIMAIO, DANIEL C. · 1985 to 2020
$25.6M
(PQC6) Molecular Determinants of Quiescent Cancer CellsR01CA185086 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI VASUDEVAN, SHOBHA · 2014 to 2017
$1.8M
Post-transcriptional Gene Expression of the TNF alpha by an FXR1a-associated microRNPR01GM100202 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI VASUDEVAN, SHOBHA · 2015 to 2019
$1.7M
Noncanonical microRNA biogenesis and function in a gamma herpesvirus and mammalsR00CA190886 · NCI · UNIVERSITY OF FLORIDA · PI XIE, MINGYI · 2016 to 2018
$739k
Howard Hughes Medical InstituteNCI NIH HHS P01 CA016038NCI NIH HHS R00 CA190886NCI NIH HHS R01 CA185086NIGMS NIH HHS R01 GM100202
6 · The paper itself

Abstract

The reversible state of proliferative arrest known as "cellular quiescence" plays an important role in tissue homeostasis and stem cell biology. By analyzing the expression of miRNAs and miRNA-processing factors during quiescence in primary human fibroblasts, we identified a group of miRNAs that are induced during quiescence despite markedly reduced expression of Exportin-5, a protein required for canonical miRNA biogenesis. The biogenesis of these quiescence-induced miRNAs is independent of Exportin-5 and depends instead on Exportin-1. Moreover, these quiescence-induced primary miRNAs (pri-miRNAs) are modified with a 2,2,7-trimethylguanosine (TMG)-cap, which is known to bind Exportin-1, and knockdown of Exportin-1 or trimethylguanosine synthase 1, responsible for (TMG)-capping, inhibits their biogenesis. Surprisingly, in quiescent cells Exportin-1-dependent pri-miR-34a is present in the cytoplasm together with a small isoform of Drosha, implying the existence of a different miRNA processing pathway in these cells. Our findings suggest that during quiescence the canonical miRNA biogenesis pathway is down-regulated and specific miRNAs are generated by an alternative pathway to regulate genes involved in cellular growth arrest.

Indexed as

Biosynthetic PathwaysCell LineCell Line, TumorCell ProliferationCytoplasmDown-RegulationExportin 1 ProteinGuanosineHEK293 CellsHeLa CellsHumansKaryopherinsMicroRNAsReceptors, Cytoplasmic and NuclearExportin 1 ProteinGuanosineKaryopherinsMicroRNAsN(2),N(2),7-trimethylguanosineReceptors, Cytoplasmic and Nuclearpri-miRNAquiescence(TMG)-capXPO1XPO5

Identifiers

PMID28584122
PMCPMC5488920
OpenAlexW2622282282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.