Evidence map›Paper›PMID 28583133›Full record

ArticleMalaria journal2017

Comparative physical genome mapping of malaria vectors Anopheles sinensis and Anopheles gambiae.

Yun Wei, Biao Cheng, Guoding Zhu, Danyu Shen, Jiangtao Liang, Cong Wang, Jing Wang, Jianxia Tang, Jun Cao, Igor V Sharakhov and 1 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Yun WeiDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Biao ChengDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Guoding ZhuKey Laboratory of National Health and Family Planning Commission on Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu Province, China.
Danyu ShenDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Jiangtao LiangDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Cong WangDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Jing WangDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Jianxia TangKey Laboratory of National Health and Family Planning Commission on Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu Province, China.
Jun CaoKey Laboratory of National Health and Family Planning Commission on Parasitic Disease Control and Prevention, Jiangsu Provincial Key Laboratory on Parasite and Vector Control Technology, Jiangsu Institute of Parasitic Diseases, Wuxi, Jiangsu Province, China.
Igor V SharakhovDepartment of Entomology, Fralin Life Science Institute, Virginia Tech, Blacksburg, VA, USA.
Ai XiaDepartment of Entomology, Nanjing Agricultural University, Nanjing, China. xiaai@njau.edu.cn.ORCID 0000-0003-0373-9196
Nanjing Agricultural University · CNNational Health and Family Planning Commission · CNNational Research Tomsk State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnopheles sinensis is a dominant natural vector of Plasmodium vivax in China, Taiwan, Japan, and Korea. Recent genome sequencing of An. sinensis provides important insights into the genomic basis of vectorial capacity. However, the lack of a physical genome map with chromosome assignment and orientation of sequencing scaffolds hinders comparative analyses with other genomes to infer evolutionary changes relevant to the vector capacity.

resultsHere, a physical genome map for An. sinensis was constructed by assigning 52 scaffolds onto the chromosomes using fluorescence in situ hybridization (FISH). This chromosome-based genome assembly composes approximately 36% of the total An. sinensis genome. Comparisons of 3955 orthologous genes between An. sinensis and Anopheles gambiae identified 361 conserved synteny blocks and 267 inversions fixed between these two lineages. The rate of gene order reshuffling on the X chromosome is approximately 3.2 times higher than that on the autosomes.

conclusionsThe physical map will facilitate detailed genomic analysis of An. sinensis and contribute to understanding of the patterns and mechanisms of large-scale genome rearrangements in anopheline mosquitoes.

Indexed as

Genome, InsectAnimalsAnophelesChromosome InversionChromosome MappingIn Situ Hybridization, FluorescenceMalariaMosquito VectorsPolytene ChromosomesSex ChromosomesChromosomal evolutionFluorescence in situ hybridizationGRIMMInversion fixationOrthoDBSynteny blocks

Identifiers

PMID28583133
PMCPMC5460330
OpenAlexW2621418721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.