Evidence map›Paper›PMID 28581485›Full record

ArticleNature chemical biology2017

Activity-based probes for functional interrogation of retaining β-glucuronidases.

Liang Wu, Jianbing Jiang, Yi Jin, Wouter W Kallemeijn, Chi-Lin Kuo, Marta Artola, Wei Dai, Cas van Elk, Marco van Eijk, Gijsbert A van der Marel and 5 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Synthesis and Application of Bioactive N-Functionalized Aziridines.Angewandte Chemie (International ed. in English) · 2025
    Review
  3. The Pathophysiological Functions of Heparanases: From Evolution, Structural and Tissue-Specific Perspectives.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Review
  4. Review
  5. Review
  6. Proteome-Wide Covalent Targeting of Acidic Residues with TunableJournal of the American Chemical Society · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. β-l-ACS chemical biology · 2023
    Article
  17. Article
  18. Review
  19. Review
  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Liang WuYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, UK.ORCID http://orcid.org/0000-0003-0294-7065
Jianbing JiangDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Yi JinYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, UK.ORCID http://orcid.org/0000-0002-6927-4371
Wouter W KallemeijnDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Chi-Lin KuoDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.ORCID http://orcid.org/0000-0003-3748-5008
Marta ArtolaDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.ORCID http://orcid.org/0000-0002-3051-3902
Wei DaiDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Cas van ElkDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.ORCID http://orcid.org/0000-0001-9620-5534
Marco van EijkDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Gijsbert A van der MarelDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Jeroen D C CodéeDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Bogdan I FloreaDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Johannes M F G AertsDepartment of Medical Biochemistry, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Herman S OverkleeftDepartment of Bioorganic Synthesis, Leiden Institute of Chemistry, Leiden University, Leiden, the Netherlands.
Gideon J DaviesYork Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, UK.ORCID http://orcid.org/0000-0002-7343-776X
Leiden University · NLUniversity of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Humans express at least two distinct β-glucuronidase enzymes that are involved in disease: exo-acting β-glucuronidase (GUSB), whose deficiency gives rise to mucopolysaccharidosis type VII, and endo-acting heparanase (HPSE), whose overexpression is implicated in inflammation and cancers. The medical importance of these enzymes necessitates reliable methods to assay their activities in tissues. Herein, we present a set of β-glucuronidase-specific activity-based probes (ABPs) that allow rapid and quantitative visualization of GUSB and HPSE in biological samples, providing a powerful tool for dissecting their activities in normal and disease states. Unexpectedly, we find that the supposedly inactive HPSE proenzyme proHPSE is also labeled by our ABPs, leading to surprising insights regarding structural relationships between proHPSE, mature HPSE, and their bacterial homologs. Our results demonstrate the application of β-glucuronidase ABPs in tracking pathologically relevant enzymes and provide a case study of how ABP-driven approaches can lead to discovery of unanticipated structural and biochemical functionality.

Indexed as

Enzyme InhibitorsFluorescent DyesGlucuronidaseHEK293 CellsHumansMolecular StructureStructure-Activity RelationshipEnzyme InhibitorsFluorescent DyesGlucuronidase

Identifiers

PMID28581485
OpenAlexW2623393796

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.