Evidence map›Paper›PMID 28581483›Full record

ArticleNature chemical biology2017

Blocking an N-terminal acetylation-dependent protein interaction inhibits an E3 ligase.

Daniel C Scott, Jared T Hammill, Jaeki Min, David Y Rhee, Michele Connelly, Vladislav O Sviderskiy, Deepak Bhasin, Yizhe Chen, Su-Sien Ong, Sergio C Chai and 18 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 110 citations in OpenAlex.

  1. Review
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  9. NProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Inhibiting neddylation: A new strategy for tumor therapy.Journal of pharmaceutical analysis · 2025
    Review
  11. Article
  12. Article
  13. Protein neddylation and its role in health and diseases.Signal transduction and targeted therapy · 2024
    Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 5 institutions in 3 countries.

Daniel C ScottDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jared T HammillDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jaeki MinDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
David Y RheeDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0002-6911-4941
Michele ConnellyDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Vladislav O SviderskiyDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Deepak BhasinDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Yizhe ChenDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID http://orcid.org/0000-0003-1782-6709
Su-Sien OngDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Sergio C ChaiDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Asli N GoktugDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Guochang HuangLaboratory of Epithelial Cancer Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
Julie K MondaDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Jonathan LowDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ho Shin KimDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0002-4291-413X
Joe R CannonDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts, USA.
Anang A ShelatDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID http://orcid.org/0000-0002-6266-2910
Taosheng ChenDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ian R KelsallMRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, UK.ORCID http://orcid.org/0000-0002-7501-6504
Arno F AlpiDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany.
Vishwajeeth PagalaSt. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Xusheng WangSt. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Junmin PengDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
Bhuvanesh SinghLaboratory of Epithelial Cancer Biology, Memorial Sloan-Kettering Cancer Center, New York, New York, USA.
J Wade HarperDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts, USA.
Brenda A SchulmanDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.
R Kip GuyDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.ORCID http://orcid.org/0000-0002-9638-2060
St. Jude Children's Research Hospital · USHarvard University · USMemorial Sloan Kettering Cancer Center · USMax Planck Institute of Biochemistry · DEUniversity of Dundee · GB

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Ubiquitin Mediated Proteolysis and Cell Cycle ControlR01AG011085 · NIA · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI JEFFREY W HARPER · 1993 to 2026
$10.9M
E3-mediated Ubiquitin-like Protein LigationR37GM069530 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULMAN, BRENDA A · 2014 to 2018
$2.0M
Proteomics Approaches to Protein TurnoverR01GM114260 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI PENG, JUNMIN · 2016 to 2019
$1.4M
Resolving the role of nicotine-mediated phosphorylation on pancreatic fibrosisK01DK098285 · NIDDK · HARVARD MEDICAL SCHOOL · PI PAULO, JOAO A · 2013 to 2017
$638k
Discovery of Small Molecule Inhibitors of the DCN1-UBC12 InteractionF32GM113310 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI HAMMILL, JARED THOMAS · 2015 to 2016
$100k
NCI NIH HHS P30 CA021765NIA NIH HHS R01 AG011085NIDDK NIH HHS K01 DK098285NIGMS NIH HHS F32 GM113310NIGMS NIH HHS R01 GM114260NIGMS NIH HHS R37 GM069530
6 · The paper itself

Abstract

N-terminal acetylation is an abundant modification influencing protein functions. Because ∼80% of mammalian cytosolic proteins are N-terminally acetylated, this modification is potentially an untapped target for chemical control of their functions. Structural studies have revealed that, like lysine acetylation, N-terminal acetylation converts a positively charged amine into a hydrophobic handle that mediates protein interactions; hence, this modification may be a druggable target. We report the development of chemical probes targeting the N-terminal acetylation-dependent interaction between an E2 conjugating enzyme (UBE2M or UBC12) and DCN1 (DCUN1D1), a subunit of a multiprotein E3 ligase for the ubiquitin-like protein NEDD8. The inhibitors are highly selective with respect to other protein acetyl-amide-binding sites, inhibit NEDD8 ligation in vitro and in cells, and suppress anchorage-independent growth of a cell line with DCN1 amplification. Overall, our data demonstrate that N-terminal acetyl-dependent protein interactions are druggable targets and provide insights into targeting multiprotein E2-E3 ligases.

Indexed as

AcetylationBinding SitesDose-Response Relationship, DrugEnzyme InhibitorsHumansModels, MolecularMolecular StructureNEDD8 ProteinSmall Molecule LibrariesStructure-Activity RelationshipUbiquitin-Protein LigasesUbiquitinsEnzyme InhibitorsNEDD8 ProteinNEDD8 protein, humanSmall Molecule LibrariesUbiquitin-Protein LigasesUbiquitins

Identifiers

PMID28581483
PMCPMC5577376
OpenAlexW2624254235

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.