Evidence map›Paper›PMID 28580552›Full record

ArticleMolecular biotechnology2017

Ability of T1 Lipase to Degrade Amorphous P(3HB): Structural and Functional Study.

Rauda A Mohamed, Abu Bakar Salleh, Adam Thean Chor Leow, Normi M Yahaya, Mohd Basyaruddin Abdul Rahman

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Polymer-Degrading Enzymes ofInternational journal of molecular sciences · 2023
    Article
  4. Characterization of Polymer Degrading Lipases, LIP1 and LIP2 FromFrontiers in bioengineering and biotechnology · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rauda A MohamedLaboratory of Enzyme Technology, Institute of Bioscience, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Abu Bakar SallehLaboratory of Enzyme Technology, Institute of Bioscience, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia. abubakar@upm.edu.my.
Adam Thean Chor LeowDepartment of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Normi M YahayaDepartment of Cell and Molecular Biology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Mohd Basyaruddin Abdul RahmanDepartment of Chemistry, Faculty of Science, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.
Universiti Putra Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An enzyme with broad substrate specificity would be an asset for industrial application. T1 lipase apparently has the same active site residues as polyhydroxyalkanoates (PHA) depolymerase. Sequences of both enzymes were studied and compared, and a conserved lipase box pentapeptide region around the nucleophilic serine was detected. The alignment of 3-D structures for both enzymes showed their active site residues were well aligned with an RMSD value of 1.981 Å despite their sequence similarity of only 53.8%. Docking of T1 lipase with P(3HB) gave forth high binding energy of 5.4 kcal/mol, with the distance of 4.05 Å between serine hydroxyl (OH) group of TI lipase to the carbonyl carbon of the substrate, similar to the native PhaZ7

Indexed as

Biodegradation, EnvironmentalCarboxylic Ester HydrolasesCatalytic DomainHydrolysisHydroxybutyratesLipaseModels, MolecularMolecular Docking SimulationPolyestersPolyhydroxybutyratesProtein Structure, TertiarySequence Homology, Nucleic AcidSubstrate SpecificityCarboxylic Ester HydrolasesHydroxybutyratesLipasepoly(3-hydroxyalkanoic acid) depolymerasepoly-beta-hydroxybutyratePolyestersPolyhydroxybutyratesAmorphous P(3HB)PhaZ7 PlStructure and functionSubstrate specificityT1 lipase

Identifiers

PMID28580552
OpenAlexW2620573791

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.