Evidence map›Paper›PMID 28579318›Full record

ArticleDevelopmental biology2017

The zebrafish kidney mutant zeppelin reveals that brca2/fancd1 is essential for pronephros development.

Paul T Kroeger, Bridgette E Drummond, Rachel Miceli, Michael McKernan, Gary F Gerlach, Amanda N Marra, Annemarie Fox, Kristen K McCampbell, Ignaty Leshchiner, Adriana Rodriguez-Mari and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Frontiers in cell and developmental biology · 2024
    Article
  6. Article
  7. Review
  8. Principles of Zebrafish Nephron Segment Development.Journal of developmental biology · 2023
    Review
  9. Review
  10. Article
  11. DNA repair genes play a variety of roles in the development of fish embryos.Frontiers in cell and developmental biology · 2023
    Review
  12. Review
  13. Biomedicines · 2022
    Article
  14. Biomedicines · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Zebrafish Cancer Predisposition Models.Frontiers in cell and developmental biology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Paul T KroegerDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Bridgette E DrummondDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Rachel MiceliDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Michael McKernanDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Gary F GerlachDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Amanda N MarraDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Annemarie FoxDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Kristen K McCampbellDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA.
Ignaty LeshchinerBrigham and Women's Hospital, Genetics and Gastroenterology Division, Harvard Medical School, Harvard Stem Cell Institute, Boston, MA 02215, USA.
Adriana Rodriguez-MariInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Ruth BreMillerInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Ryan ThummelDepartments of Anatomy and Cell Biology and Opthamology, Wayne State University School of Medicine, Wayne State University, Detroit, MI 48201, USA.
Alan J DavidsonDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland 1142, NZ.
John PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Wolfram GoesslingBrigham and Women's Hospital, Genetics and Gastroenterology Division, Harvard Medical School, Harvard Stem Cell Institute, Boston, MA 02215, USA.
Rebecca A WingertDepartment of Biological Sciences, Center for Stem Cells and Regenerative Medicine, Center for Zebrafish Research, University of Notre Dame, Notre Dame, IN 46556, USA. Electronic address: rwingert@nd.edu.
University of Notre Dame · USUniversity of Oregon · USHarvard Stem Cell Institute · USUniversity of Auckland · NZWayne State University · US

Funding

Xenograft CoreP01HL048546 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1994 to 2020
$36.4M
Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI PARTHASARATHY, RAGHUVEER · 1987 to 2017
$28.8M
Development of Aquatic Model Resources for Therapeutic ScreensR24OD018555 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2014 to 2017
$2.6M
Generation of novel models of kidney defects using the zebrafishR01DK100237 · NIDDK · UNIVERSITY OF NOTRE DAME · PI WINGERT, REBECCA ANN · 2013 to 2017
$1.8M
Emerging Papillomaviruses in Immunosuppressed DogsR01OD011168 · OD · GEORGETOWN UNIVERSITY · PI SCHLEGEL, RICHARD · 2012 to 2014
$1.2M
NHLBI NIH HHS P01 HL048546NICHD NIH HHS P01 HD022486NIDDK NIH HHS R01 DK100237NIH HHS R01 OD011168NIH HHS R24 OD018555
6 · The paper itself

Abstract

The zebrafish kidney is conserved with other vertebrates, making it an excellent genetic model to study renal development. The kidney collects metabolic waste using a blood filter with specialized epithelial cells known as podocytes. Podocyte formation is poorly understood but relevant to many kidney diseases, as podocyte injury leads to progressive scarring and organ failure. zeppelin (zep) was isolated in a forward screen for kidney mutants and identified as a homozygous recessive lethal allele that causes reduced podocyte numbers, deficient filtration, and fluid imbalance. Interestingly, zep mutants had a larger interrenal gland, the teleostean counterpart of the mammalian adrenal gland, which suggested a fate switch with the related podocyte lineage since cell proliferation and cell death were unchanged within the shared progenitor field from which these two identities arise. Cloning of zep by whole genome sequencing (WGS) identified a splicing mutation in breast cancer 2, early onset (brca2)/fancd1, which was confirmed by sequencing of individual fish. Several independent brca2 morpholinos (MOs) phenocopied zep, causing edema, reduced podocyte number, and increased interrenal cell number. Complementation analysis between zep and brca2

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAnimals, Genetically ModifiedBRCA2 ProteinCell DifferentiationCell ProliferationCloning, MolecularDisease Models, AnimalIn Situ Hybridization, FluorescenceMorpholinosOrganogenesisPodocytesPronephrosZebrafishZebrafish ProteinsBRCA2 Proteinbrca2 protein, zebrafishMorpholinosZebrafish Proteinsbrca2/fancd1GlomerulusInterrenalKidneyPodocytePronephrosZebrafish

Identifiers

PMID28579318
PMCPMC5571230
OpenAlexW2620613559

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.