Evidence map›Paper›PMID 28577935›Full record

ArticleMethods (San Diego, Calif.)2017

Co-expression analysis among microRNAs, long non-coding RNAs, and messenger RNAs to understand the pathogenesis and progression of diabetic kidney disease at the genetic level.

Lihua Zhang, Rong Li, Junyi He, Qiuping Yang, Yanan Wu, Jingshan Huang, Bin Wu

Abstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Lihua ZhangDepartment of Geriatric Endocrinology, First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan 650031, China.
Rong LiDepartment of Nephrology, First People's Hospital of Yunnan Province, Kunming, Yunnan 650032, China.
Junyi HeDepartment of Geriatric Endocrinology, First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan 650031, China.
Qiuping YangDepartment of Geriatric Endocrinology, First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan 650031, China.
Yanan WuDepartment of Geriatric Endocrinology, First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan 650031, China.
Jingshan HuangComputer Science Department, School of Computing, University of South Alabama, Mobile, AL 36688, USA.
Bin WuDepartment of Endocrinology and Metabolism, First Affiliated Hospital of Kunming Medical University, Kunming, Yunnan 650031, China. Electronic address: wu.bin.kmu@qq.com.

Funding

OmniSearch: A semantic search tool for discovering microRNAs' critical roles in hU01CA180982 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI HUANG, JINGSHAN · 2014 to 2016
$913k
NCI NIH HHS U01 CA180982
6 · The paper itself

Abstract

Diabetic kidney disease (DKD) is a serious disease that presents a major health problem worldwide. There is a desperate need to explore novel biomarkers to further facilitate the early diagnosis and effective treatment in DKD patients, thus preventing them from developing end-stage renal disease (ESRD). However, most regulation mechanisms at the genetic level in DKD still remain unclear. In this paper, we describe our innovative methodologies that integrate biological, computational, and statistical approaches to investigate important roles performed by regulations among microRNAs (miRs), long non-coding RNAs (lncRNAs), and messenger RNAs (mRNAs) in DKD. We conducted fully transparent, rigorously designed experiments. Our robust and reproducible results identified hsa-miR-223-3p as a candidate novel biomarker performing important roles in DKD disease process.

Indexed as

AdultAgedBiomarkersBlood GlucoseCase-Control StudiesComputational BiologyDiabetic NephropathiesDisease ProgressionFemaleGene Expression RegulationGene Regulatory NetworksGlomerular Filtration RateHumansKidney Failure, ChronicMaleMicroarray AnalysisBiomarkersBlood GlucoseMicroRNAsMIR223, humanRNA, Long NoncodingRNA, MessengerBiomarkerCo-expression analysisDiabetesDiabetic kidney disease (DKD)Long non-coding RNA (lncRNA)MicroRNA (miR)

Identifiers

PMID28577935
PMCPMC5540768

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.