Evidence map›Paper›PMID 28577284›Full record

ArticleRice (New York, N.Y.)2017

Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae.

Chang-Jin Park, Tong Wei, Rita Sharma, Pamela C Ronald

Open access · goldAbstract read
In one paragraph

Article in Rice (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Resistance gene againstFrontiers in plant science · 2026
    Review
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  5. Research Progress on Cloning and Function ofFrontiers in plant science · 2022
    Review
  6. Frontiers in plant science · 2022
    Article
  7. Review
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  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Chang-Jin ParkDepartment of Plant Pathology and the Genome Center, University of California Davis, Davis, CA, 95616, USA.
Tong WeiDepartment of Plant Pathology and the Genome Center, University of California Davis, Davis, CA, 95616, USA.
Rita SharmaDepartment of Plant Pathology and the Genome Center, University of California Davis, Davis, CA, 95616, USA.
Pamela C RonaldDepartment of Plant Pathology and the Genome Center, University of California Davis, Davis, CA, 95616, USA. pcronald@ucdavis.edu.
Lawrence Berkeley National Laboratory · USJawaharlal Nehru University · INUniversity of California, Davis · US

Funding

Receptor Kinase-Mediated Signaling in the Innate Immune ResponseR01GM055962 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI RONALD, PAMELA C · 1999 to 2013
$2.9M
NIGMS NIH HHS R01 GM055962
6 · The paper itself

Abstract

backgroundThe rice immune receptor XA21 confers resistance to the bacterial pathogen, Xanthomonas oryzae pv. oryzae (Xoo). To elucidate the mechanism of XA21-mediated immunity, we previously performed a yeast two-hybrid screening for XA21 interactors and identified XA21 binding protein 21 (XB21).

resultsHere, we report that XB21 is an auxilin-like protein predicted to function in clathrin-mediated endocytosis. We demonstrate an XA21/XB21 in vivo interaction using co-immunoprecipitation in rice. Overexpression of XB21 in rice variety Kitaake and a Kitaake transgenic line expressing XA21 confers a necrotic lesion phenotype and enhances resistance to Xoo. RNA sequencing reveals that XB21 overexpression results in the differential expression of 8735 genes (4939 genes up- and 3846 genes down-regulated) (≥2-folds, FDR ≤0.01). The up-regulated genes include those predicted to be involved in 'cell death' and 'vesicle-mediated transport'.

conclusionThese results indicate that XB21 plays a role in the plant immune response and in regulation of cell death. The up-regulation of genes controlling 'vesicle-mediated transport' in XB21 overexpression lines is consistent with a functional role for XB21 as an auxilin.

Indexed as

AuxilinAuxilin-Like ProteinDisease ResistanceHeat Shock Cognate ProteinHeat Shock ProteinXA21 Binding Protein 21XA21 Immune ReceptorXanthomonas oryzae pv. oryzae

Identifiers

PMID28577284
PMCPMC5457384
OpenAlexW2621366609

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.