Evidence map›Paper›PMID 28577177›Full record

ArticlePlanta2017

The epigenetic memory of temperature during embryogenesis modifies the expression of bud burst-related genes in Norway spruce epitypes.

Elena Carneros, Igor Yakovlev, Marcos Viejo, Jorunn E Olsen, Carl Gunnar Fossdal

Open access · hybridAbstract read
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Epigenetic Mechanisms of Tree Responses to Climatic Changes.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Plant developmental stage influences responses ofPlant-environment interactions (Hoboken, N.J.) · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Elena CarnerosNorwegian Institute of Bioeconomy Research, 1431, Ås, Norway.ORCID http://orcid.org/0000-0003-2066-6320
Igor YakovlevNorwegian Institute of Bioeconomy Research, 1431, Ås, Norway.
Marcos ViejoDepartment of Plant Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, 1432, Ås, Norway.
Jorunn E OlsenDepartment of Plant Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, 1432, Ås, Norway.
Carl Gunnar FossdalNorwegian Institute of Bioeconomy Research, 1431, Ås, Norway. carl.gunnar.fossdal@nibio.no.
Norwegian Institute of Bioeconomy Research · NONorwegian University of Life Sciences · NOUniversidad de Alcalá · ES

Funding

EU FP7 Project ProCoGen 289841NFR-FRIMEDBIO 240766/F20
6 · The paper itself

Abstract

MAIN

conclusionEpigenetic memory affects the timing of bud burst phenology and the expression of bud burst-related genes in genetically identical Norway spruce epitypes in a manner usually associated with ecotypes. In Norway spruce, a temperature-dependent epigenetic memory established during embryogenesis affects the timing of bud burst and bud set in a reproducible and predictable manner. We hypothesize that the clinal variation in these phenological traits, which is associated with adaptation to growth under frost-free conditions, has an epigenetic component. In Norway spruce, dehydrins (DHNs) have been associated with extreme frost tolerance. DHN transcript levels decrease gradually prior to flushing, a time when trees are highly sensitive to frost. Furthermore, EARLY BUD BREAK 1 genes (EBB1) and the FT-TFL1-LIKE 2-gene (PaFTL2) were previously suggested to be implied in control of bud phenology. Here we report an analysis of transcript levels of 12 DHNs, 3 EBB1 genes and FTL2 in epitypes of the same genotype generated at different epitype-inducing temperatures, before and during spring bud burst. Earlier flushing of epitypes originating from embryos developed at 18 °C as compared to 28 °C, was associated with differential expression of these genes between epitypes and between buds and last year's needles. The majority of these genes showed significantly different expressions between epitypes in at least one time point. The general trend in DHN expression pattern in buds showed the expected reduction in transcript levels when approaching flushing, whereas, surprisingly, transcript levels peaked later in needles, mainly at the moment of bud burst. Collectively, our results demonstrate that the epigenetic memory of temperature during embryogenesis affects bud burst phenology and expression of the bud burst-related DHN, EBB1 and FTL2 genes in genetically identical Norway spruce epitypes.

Indexed as

Epigenesis, GeneticGenes, PlantPiceaPlant ShootsReal-Time Polymerase Chain ReactionSeedsTemperatureTranscriptomeBud phenologyDehydrinsEBB1 genesEpigenetic memoryFTL2Picea abies

Identifiers

PMID28577177
PMCPMC5561168
OpenAlexW2621134887

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.