Evidence map›Paper›PMID 28575401›Full record

ArticleJournal of experimental botany2017

Localization of Arabidopsis FORKED1 to a RABA-positive compartment suggests a role in secretion.

Neema Prabhakaran Mariyamma, Hongwei Hou, Francine M Carland, Timothy Nelson, Elizabeth A Schultz

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. microPublication biology · 2023
    Article
  3. Article
  4. International journal of molecular sciences · 2021
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Neema Prabhakaran MariyammaDepartment of Biological Sciences, University of Lethbridge, Lethbridge, AB, TIK 3M4, Canada.
Hongwei HouDepartment of Biological Sciences, University of Lethbridge, Lethbridge, AB, TIK 3M4, Canada.
Francine M CarlandDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Timothy NelsonDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Elizabeth A SchultzDepartment of Biological Sciences, University of Lethbridge, Lethbridge, AB, TIK 3M4, Canada.
University of Lethbridge · CAYale University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When FORKED1 (FKD1) is mutated, asymmetric localization of PINFORMED1 (PIN1), particularly to the apical side of cells, fails to occur properly in developing veins, resulting in an open vein pattern. FKD1 encodes a protein with a Pleckstrin homology-like (PL) domain, suggesting interaction with phosphoinositides. FKD1 has been previously found to interact with an ADP ribosylation factor GTPase-activating protein (ARF-GAP) important for vein patterning, SCARFACE/VAN3 (SFC). We find that FKD1-green fluorescent protein (GFP) localizes to the plasma membrane and to punctae labeled by SFC-yellow fluorescent protein (YFP). Supporting the idea that the FKD1 PL domain recognizes phosphatidylinositol 4-phosphate [PtdIns(4)P], FKD1-GFP co-localizes with PtdIns(4)P markers, and is more cytosolic when in a background mutant for the PtdIns(4,5)P2 hydrolases CVP2 and CVL1. Both FKD1 and SFC partially co-localize with markers for the trans-Golgi network (TGN), at which endocytic and secretory pathways merge. FKD1-labeled punctae rarely co-localize with the endocytic marker FM4-64, suggesting that FKD1 is not involved primarily in the endocytic pathway. FKD1 and SFC co-localize with members of the RABA group of RAB-GTPases, which are proposed to act in the post-Golgi secretory pathway. The compartments labeled by FKD1 and SFC do not localize to membrane compartments induced by the fungal toxin brefeldin A (BFA). Collectively, our data suggest that FKD1 and SFC act in a BFA-insensitive secretory pathway.

Indexed as

ADP-Ribosylation FactorsArabidopsisBrefeldin ACell MembraneGTPase-Activating ProteinsMycotoxinsrab GTP-Binding Proteinstrans-Golgi NetworkADP-Ribosylation FactorsBrefeldin AGTPase-Activating ProteinsMycotoxinsrab GTP-Binding ProteinsVAN3 protein, ArabidopsisFORKED1leaf vein patterningPIN1 localizationRABASCARFACE/VAN3secretory pathwayvascular differentiation

Identifiers

PMID28575401
PMCPMC5853234
OpenAlexW2620580796

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.