Evidence map›Paper›PMID 28575298›Full record

ArticleGlycobiology2017

Chemo-enzymatic synthesis of lipid-linked GlcNAc2Man5 oligosaccharides using recombinant Alg1, Alg2 and Alg11 proteins.

Ana S Ramírez, Jérémy Boilevin, Chia-Wei Lin, Bee Ha Gan, Daniel Janser, Markus Aebi, Tamis Darbre, Jean-Louis Reymond, Kaspar P Locher

Open access · hybridAbstract read
In one paragraph

Article in Glycobiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Cell-freeFrontiers in molecular biosciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. AnFrontiers in cell and developmental biology · 2022
    Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Oligosaccharide Synthesis and Translational Innovation.Journal of the American Chemical Society · 2019
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ana S RamírezDepartment of Biology, Institute of Molecular Biology and Biophysics, Eidgenössische Technische Hochschule (ETH), Schafmattstrasse 20, CH-8093 Zürich, Switzerland.
Jérémy BoilevinDepartment of Chemistry and Biochemistry, University of Berne, CH-3012 Berne, Switzerland.
Chia-Wei LinInstitute of Microbiology, Eidgenössische Technische Hochschule (ETH), CH-8093 Zürich, Switzerland.
Bee Ha GanDepartment of Chemistry and Biochemistry, University of Berne, CH-3012 Berne, Switzerland.
Daniel JanserDepartment of Biology, Institute of Molecular Biology and Biophysics, Eidgenössische Technische Hochschule (ETH), Schafmattstrasse 20, CH-8093 Zürich, Switzerland.
Markus AebiInstitute of Microbiology, Eidgenössische Technische Hochschule (ETH), CH-8093 Zürich, Switzerland.
Tamis DarbreDepartment of Chemistry and Biochemistry, University of Berne, CH-3012 Berne, Switzerland.
Jean-Louis ReymondDepartment of Chemistry and Biochemistry, University of Berne, CH-3012 Berne, Switzerland.
Kaspar P LocherDepartment of Biology, Institute of Molecular Biology and Biophysics, Eidgenössische Technische Hochschule (ETH), Schafmattstrasse 20, CH-8093 Zürich, Switzerland.
University of Bern · CHBoard of the Swiss Federal Institutes of Technology · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The biosynthesis of eukaryotic lipid-linked oligosaccharides (LLOs) that act as donor substrates in eukaryotic protein N-glycosylation starts on the cytoplasmic side of the endoplasmic reticulum and includes the sequential addition of five mannose units to dolichol-pyrophosphate-GlcNAc2. These reactions are catalyzed by the Alg1, Alg2 and Alg11 gene products and yield Dol-PP-GlcNAc2Man5, an LLO intermediate that is subsequently flipped to the lumen of the endoplasmic reticulum. While the purification of active Alg1 has previously been described, Alg11 and Alg2 have been mostly studied in vivo. We here describe the expression and purification of functional, full length Alg2 protein. Along with the purified soluble domains Alg1 and Alg11, we used Alg2 to chemo-enzymatically generate Dol-PP-GlcNAc2Man5 analogs starting from synthetic LLOs containing a chitobiose moiety coupled to oligoprenyl carriers of distinct lengths (C10, C15, C20 and C25). We found that while the addition of the first mannose unit by Alg1 was successful with all of the LLO molecules, the Alg2-catalyzed reaction was only efficient if the acceptor LLOs contained a sufficiently long lipid tail of four or five isoprenyl units (C20 and C25). Following conversion with Alg11, the resulting C20 or C25 -containing GlcNAc2Man5 LLO analogs were successfully used as donor substrates of purified single-subunit oligosaccharyltransferase STT3A from Trypanosoma brucei. Our results provide a chemo-enzymatic method for the generation of eukaryotic LLO analogs and are the basis of subsequent mechanistic studies of the enigmatic Alg2 reaction mechanism.

Indexed as

lipid-linked oligosaccharidemannosylationmannosyltransferaseN-glycans

Identifiers

PMID28575298
PMCPMC5881667
OpenAlexW2620774762

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.