Evidence map›Paper›PMID 28573789›Full record

ArticleFEBS letters2017

Translation-dependent mRNA cleavage by YhaV in Escherichia coli.

Wonho Choi, Yoshihiro Yamaguchi, Jae-Woo Lee, Kyung-Min Jang, Masayori Inouye, Sung-Gun Kim, Min-Ho Yoon, Jung-Ho Park

Open access · bronzeAbstract readLetter
PubMed Publisher
In one paragraph

Article in FEBS letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Wonho ChoiBio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, South Korea.
Yoshihiro YamaguchiOCU Advanced Research Institute for Natural Science and Technology, Osaka City University, Japan.
Jae-Woo LeeBio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, South Korea.
Kyung-Min JangBio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, South Korea.
Masayori InouyeDepartment of Biochemistry, Rutgers-Robert Wood Johnson Medical School and Center for Advanced Biotechnology and Medicine, Piscataway, NJ, USA.
Sung-Gun KimDepartment of Biomedical Sicience, U1 University, Youngdong, South Korea.
Min-Ho YoonDepartment of Bio-Environmental Chemistry, College of Agriculture and Life Sciences, Chungnam National University, Yuseong-gu, South Korea.
Jung-Ho ParkBio-Evaluation Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju, South Korea.ORCID 0000-0003-0441-4457
Chungnam National University · KRKorea Research Institute of Bioscience and Biotechnology · KROsaka City University · JPRutgers, The State University of New Jersey · USYoungdong University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many bacteria have toxin-antitoxin (TA) systems, where toxin gene expression inhibits their own cell growth. mRNA is one of the well-known targets of the toxins in the type II toxin-antitoxin systems. Here, we examined the ribosome dependency of the endoribonuclease activity of YhaV, one of the toxins in type II TA systems, on mRNA in vitro and in vivo. A polysome profiling assay revealed that YhaV is bound to the 70S ribosomes and 50S ribosomal subunits. Moreover, we found that while YhaV cleaves ompF and lpp mRNAs in a translation-dependent manner, they did not cleave the 5' untranslated region in primer extension experiments. From these results, we conclude that YhaV is a ribosome-dependent toxin that cleaves mRNA in a translation-dependent manner.

Indexed as

Protein BiosynthesisRNA CleavageBacterial Outer Membrane ProteinsBacterial ToxinsEscherichia coliEscherichia coli ProteinsLipoproteinsPorinsRibosomesRibosome Subunits, Large, BacterialRNA, MessengerBacterial Outer Membrane ProteinsBacterial ToxinsEscherichia coli ProteinsLipoproteinsLpp protein, E coliOmpF proteinPorinsRNA, MessengeryhaV protein, E coliendoribonucleaseEscherichia colitoxin-antitoxin system

Identifiers

PMID28573789
OpenAlexW2620632149

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.