Evidence map›Paper›PMID 28572606›Full record

ArticleScientific reports2017

Automated screening for Fragile X premutation carriers based on linguistic and cognitive computational phenotypes.

Arezoo Movaghar, Marsha Mailick, Audra Sterling, Jan Greenberg, Krishanu Saha

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Phenotypic Profile Associated With theFrontiers in psychiatry · 2021
    Article
  7. Review
  8. Data-driven phenotype discovery ofScience advances · 2019
    Article
  9. Article
  10. Health Profiles of Mosaic Versus Non-mosaicFrontiers in genetics · 2018
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arezoo MovagharWaisman Center, University of Wisconsin-Madison, Madison, WI, USA.
Marsha MailickWaisman Center, University of Wisconsin-Madison, Madison, WI, USA. marsha.mailick@wisc.edu.
Audra SterlingWaisman Center, University of Wisconsin-Madison, Madison, WI, USA. audra.sterling@wisc.edu.
Jan GreenbergDepartment of Social Work, University of Wisconsin-Madison, Madison, WI, USA.
Krishanu SahaWaisman Center, University of Wisconsin-Madison, Madison, WI, USA. ksaha@wisc.edu.ORCID 0000-0003-2837-0858
University of Wisconsin–Madison · US

Funding

UNC MRDD Research CenterP30HD003110 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PIVEN, JOSEPH · 1985 to 2012
$28.7M
WISCONSIN CENTER ON MENTAL RETARDATION: CORE SUPPORTP30HD003352 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI DAVIDSON, RICHARD J · 1985 to 2015
$25.2M
Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI SVAREN, JOHN P · 2016 to 2020
$6.0M
FMR1 Premutation Phenotypes in Population-Based & Clinically-Ascertained SamplesR01HD082110 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI Leann Smith DaWalt, MARSHA RUTH MAILICK · 2015 to 2026
$5.1M
IMPACTS OF PARENTING ADOLESCENTS &ADULTS WITH AUTISMR01AG008768 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI MAILICK, MARSHA RUTH · 1990 to 2011
$4.3M
Grammatical Development in Boys with Fragile X Syndrome and AutismR03DC011616 · NIDCD · UNIVERSITY OF WISCONSIN-MADISON · PI STERLING, AUDRA MARIE · 2011 to 2013
$438k
NIA NIH HHS R01 AG008768NICHD NIH HHS P30 HD003110NICHD NIH HHS P30 HD003352NICHD NIH HHS R01 HD082110NICHD NIH HHS U54 HD090256NIDCD NIH HHS R03 DC011616
6 · The paper itself

Abstract

Millions of people globally are at high risk for neurodegenerative disorders, infertility or having children with a disability as a result of the Fragile X (FX) premutation, a genetic abnormality in FMR1 that is underdiagnosed. Despite the high prevalence of the FX premutation and its effect on public health and family planning, most FX premutation carriers are unaware of their condition. Since genetic testing for the premutation is resource intensive, it is not practical to screen individuals for FX premutation status using genetic testing. In a novel approach to phenotyping, we have utilized audio recordings and cognitive profiling assessed via self-administered questionnaires on 200 females. Machine-learning methods were developed to discriminate FX premutation carriers from mothers of children with autism spectrum disorders, the comparison group. By using a random forest classifier, FX premutation carriers could be identified in an automated fashion with high precision and recall (0.81 F1 score). Linguistic and cognitive phenotypes that were highly associated with FX premutation carriers were high language dysfluency, poor ability to organize material, and low self-monitoring. Our framework sets the foundation for computational phenotyping strategies to pre-screen large populations for this genetic variant with nominal costs.

Indexed as

CognitionLinguisticsPhenotypeAdultFemaleFragile X Messenger Ribonucleoprotein 1Genetic TestingHumansMachine LearningMiddle AgedMutationNeuropsychological TestsReproducibility of ResultsROC CurveSpeechFMR1 protein, humanFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID28572606
PMCPMC5454004
OpenAlexW2618642435

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.