Evidence map›Paper›PMID 28572513›Full record

ArticleThe Journal of biological chemistry2017

Domain alternation and active site remodeling are conserved structural features of ubiquitin E1.

Zongyang Lv, Lingmin Yuan, James H Atkison, Grace Aldana-Masangkay, Yuan Chen, Shaun K Olsen

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. The Magic and Mystery of TRIM65 in Diseases.Current medicinal chemistry · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Structural Diversity of Ubiquitin E3 Ligase.Molecules (Basel, Switzerland) · 2021
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Structural basis for adenylation and thioester bond formation in the ubiquitin E1.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Zongyang LvDepartment of Biochemistry and Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina 29425.
Lingmin YuanDepartment of Biochemistry and Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina 29425.
James H AtkisonDepartment of Biochemistry and Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina 29425.
Grace Aldana-MasangkayDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, Duarte, California 91010.
Yuan ChenDepartment of Molecular Medicine, Beckman Research Institute of City of Hope, Duarte, California 91010.
Shaun K OlsenDepartment of Biochemistry and Molecular Biology and Hollings Cancer Center, Medical University of South Carolina, Charleston, South Carolina 29425. Electronic address: olsensk@musc.edu.
City of Hope · USMedical University of South Carolina · USMUSC Hollings Cancer Center · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
SUMO modification and DNA damage response in cancer therapyR01GM086171 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2008 to 2020
$5.2M
Integrative Training in Oncogenic SignalingT32CA193201 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI HOWE, PHILIP H, LONG, DAVID THOMAS · 2016 to 2025
$3.7M
Regulation of Telomerase by Sphingolipid Signaling in Lung CancerR01CA088932 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI OGRETMEN, BESIM · 2002 to 2017
$3.3M
Targeting c-Myc and Proteasome Inhibitor Resistance in Multiple MyelomaR01CA212119 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHEN, YUAN · 2017 to 2021
$2.8M
Structural Biology of the Ubiquitin Conjugation SystemR01GM115568 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI OLSEN, SHAUN · 2015 to 2023
$2.7M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Crystallization robotics to support X-ray crystallography at MUSCS10RR027139 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DAVIES, CHRISTOPHER · 2011 to 2011
$125k
NCI NIH HHS R01 CA088932NCI NIH HHS R01 CA212119NCI NIH HHS T32 CA193201NCRR NIH HHS S10 RR027139NCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM086171NIGMS NIH HHS R01 GM115568
6 · The paper itself

Abstract

E1 enzymes for ubiquitin (Ub) and Ub-like modifiers (Ubls) harbor two catalytic activities that are required for Ub/Ubl activation: adenylation and thioester bond formation. Structural studies of the E1 for the Ubl

Indexed as

Models, MolecularProtein Processing, Post-TranslationalAmino Acid SubstitutionCatalytic DomainCrystallography, X-RayCysteineDatabases, ProteinDisulfidesEnzyme ActivationEnzyme InhibitorsLigandsMutationProtein ConformationProtein Interaction Domains and MotifsProtein MultimerizationProtein RefoldingCysteineDisulfidesEnzyme InhibitorsLigandsNSC624206ptr3 protein, S pombeRecombinant ProteinsSchizosaccharomyces pombe ProteinsSUMO-1 ProteinUbc4 protein, S pombeUbiquitinUbiquitin-Activating EnzymesUbiquitin-Conjugating Enzymesadenylationconformational changedomain alternationE1enzyme mechanismenzyme structurestructure-functionthioesterubiquitinX-ray crystallography

Identifiers

PMID28572513
PMCPMC5519361
OpenAlexW2620876625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.