Evidence map›Paper›PMID 28570695›Full record

ArticlePLoS pathogens2017

Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein.

Jianhua Zhao, Ksenia Beyrakhova, Yao Liu, Claudia P Alvarez, Stephanie A Bueler, Li Xu, Caishuang Xu, Michal T Boniecki, Voula Kanelis, Zhao-Qing Luo and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 70 citations in OpenAlex.

  1. Type VI Secretion Systems inMicroorganisms · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Structure of yeast RAVE bound to a partial VProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Review
  9. Review
  10. A model for collagen secretion by intercompartmental continuities.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Eat or Be Eaten: Strategies Used byInfection and immunity · 2023
    Review
  14. ReplicativebioRxiv : the preprint server for biology · 2023
    Article
  15. Review
  16. Article
  17. Molecular design of a pathogen activated, self-assembling mechanopharmaceutical device.Journal of controlled release : official journal of the Controlled Release Society · 2022
    Review
  18. Article
  19. Coordinated conformational changes in the VNature structural & molecular biology · 2022
    Article
  20. Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Jianhua ZhaoThe Hospital for Sick Children Research Institute, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-4997-766X
Ksenia BeyrakhovaDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Yao LiuDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID http://orcid.org/0000-0002-4330-2389
Claudia P AlvarezDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Stephanie A BuelerThe Hospital for Sick Children Research Institute, Toronto, Ontario, Canada.
Li XuDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID http://orcid.org/0000-0002-6220-9382
Caishuang XuDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Michal T BonieckiDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Voula KanelisDepartment of Chemistry, University of Toronto, Toronto, Ontario, Canada.
Zhao-Qing LuoDepartment of Biological Sciences, Purdue University, West Lafayette, Indiana, United States of America.ORCID http://orcid.org/0000-0001-8890-6621
Miroslaw CyglerDepartment of Biochemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.ORCID http://orcid.org/0000-0003-4579-1881
John L RubinsteinThe Hospital for Sick Children Research Institute, Toronto, Ontario, Canada.
University of Saskatchewan · CAUniversity of Toronto · CAPurdue University West Lafayette · USHospital for Sick Children · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intracellular pathogenic bacteria evade the immune response by replicating within host cells. Legionella pneumophila, the causative agent of Legionnaires' Disease, makes use of numerous effector proteins to construct a niche supportive of its replication within phagocytic cells. The L. pneumophila effector SidK was identified in a screen for proteins that reduce the activity of the proton pumping vacuolar-type ATPases (V-ATPases) when expressed in the yeast Saccharomyces cerevisae. SidK is secreted by L. pneumophila in the early stages of infection and by binding to and inhibiting the V-ATPase, SidK reduces phagosomal acidification and promotes survival of the bacterium inside macrophages. We determined crystal structures of the N-terminal region of SidK at 2.3 Å resolution and used single particle electron cryomicroscopy (cryo-EM) to determine structures of V-ATPase:SidK complexes at ~6.8 Å resolution. SidK is a flexible and elongated protein composed of an α-helical region that interacts with subunit A of the V-ATPase and a second region of unknown function that is flexibly-tethered to the first. SidK binds V-ATPase strongly by interacting via two α-helical bundles at its N terminus with subunit A. In vitro activity assays show that SidK does not inhibit the V-ATPase completely, but reduces its activity by ~40%, consistent with the partial V-ATPase deficiency phenotype its expression causes in yeast. The cryo-EM analysis shows that SidK reduces the flexibility of the A-subunit that is in the 'open' conformation. Fluorescence experiments indicate that SidK binding decreases the affinity of V-ATPase for a fluorescent analogue of ATP. Together, these results reveal the structural basis for the fine-tuning of V-ATPase activity by SidK.

Indexed as

Adenosine TriphosphateBacterial ProteinsGene Expression Regulation, EnzymologicHumansLegionella pneumophilaLegionnaires' DiseaseProtein ConformationVacuolar Proton-Translocating ATPasesAdenosine TriphosphateBacterial ProteinsVacuolar Proton-Translocating ATPases

Identifiers

PMID28570695
PMCPMC5469503
OpenAlexW2621372813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.