Evidence map›Paper›PMID 28570045›Full record

ArticleBiochemistry2017

Characterization of DNA Binding by the Isolated N-Terminal Domain of Vaccinia Virus DNA Topoisomerase IB.

Benjamin Reed, Lyudmila Yakovleva, Stewart Shuman, Ranajeet Ghose

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Twist and Turn-Topoisomerase Functions in Mitochondrial DNA Maintenance.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Benjamin ReedDepartment of Chemistry and Biochemistry, The City College of New York , New York, New York 10031, United States.
Lyudmila YakovlevaMolecular Biology Program, Sloan-Kettering Institute , New York, New York 10021, United States.
Stewart ShumanMolecular Biology Program, Sloan-Kettering Institute , New York, New York 10021, United States.
Ranajeet GhoseDepartment of Chemistry and Biochemistry, The City College of New York , New York, New York 10031, United States.ORCID 0000-0002-0763-8686
City College of New York · USKettering University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Vaccina Virus DNA TopoisomeraseR37GM046330 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI SHUMAN, STEWART H · 2007 to 2016
$6.1M
VACCINIA VIRUS DNA TOPOISOMERASE IR01GM046330 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SHUMAN, STEWART H · 1991 to 2006
$3.1M
NIGMS NIH HHS R01 GM046330NIGMS NIH HHS R37 GM046330NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Vaccinia TopIB (vTopIB), a 314-amino acid eukaryal-type IB topoisomerase, recognizes and transesterifies at the DNA sequence 5'-(T/C)CCTT↓, leading to the formation of a covalent DNA-(3'-phosphotyrosyl

Indexed as

Models, MolecularAmino Acid SubstitutionCalorimetryDNADNA Topoisomerases, Type IHydrodynamicsIsoenzymesKineticsMutationNuclear Magnetic Resonance, BiomolecularNucleotide MotifsOsmolar ConcentrationPeptide FragmentsProtein Interaction Domains and MotifsRecombinant Fusion ProteinsRecombinant ProteinsDNADNA Topoisomerases, Type IIsoenzymesPeptide FragmentsRecombinant Fusion ProteinsRecombinant ProteinsViral Proteins

Identifiers

PMID28570045
PMCPMC7251655
OpenAlexW2621167113

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.