Evidence map›Paper›PMID 28568901›Full record

ArticleAging cell2017

The replicative lifespan-extending deletion of SGF73 results in altered ribosomal gene expression in yeast.

Amanda G Mason, Renee M Garza, Mark A McCormick, Bhumil Patel, Brian K Kennedy, Lorraine Pillus, Albert R La Spada

Open access · goldAbstract read
In one paragraph

Article in Aging cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. UPS writes a new saga of SAGA.Biochimica et biophysica acta. Gene regulatory mechanisms · 2023
    Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Molecular Targets and Therapeutic Strategies in Spinocerebellar Ataxia Type 7.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Amanda G MasonDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
Renee M GarzaDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Mark A McCormickBuck Institute for Research on Aging, Novato, CA, USA.
Bhumil PatelBuck Institute for Research on Aging, Novato, CA, USA.
Brian K KennedyBuck Institute for Research on Aging, Novato, CA, USA.
Lorraine PillusDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Albert R La SpadaDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, USA.
University of California, San Diego · USBuck Institute for Research on Aging · USRady Children's Hospital-San Diego · USUniversity of Washington · US

Funding

Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
SCA7 RETINAL DEGENERATION: MOLECULAR BASIS &THERAPYR01EY014061 · NEI · UNIVERSITY OF WASHINGTON · PI ALBERT R LA SPADA · 2002 to 2026
$8.4M
Molecular genetic regulation of autophagy in health and neurodegenerative diseaseR01AG033082 · NIA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LA SPADA, ALBERT R · 2009 to 2019
$4.0M
Chromatin Regulation by Deacetylation and SUMO-Targeted Ubiquitin LigationR01GM090177 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PILLUS, LORRAINE · 2009 to 2012
$1.3M
Identification of STUbL substrates critical for cell growth and regulationF32GM089101 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GARZA, RENEE M · 2009 to 2011
$151k
NEI NIH HHS R01 EY014061NIA NIH HHS R01 AG033082NIGMS NIH HHS F32 GM089101NIGMS NIH HHS R01 GM090177NIGMS NIH HHS T32 GM008666
6 · The paper itself

Abstract

Sgf73, a core component of SAGA, is the yeast orthologue of ataxin-7, which undergoes CAG-polyglutamine repeat expansion leading to the human neurodegenerative disease spinocerebellar ataxia type 7 (SCA7). Deletion of SGF73 dramatically extends replicative lifespan (RLS) in yeast. To further define the basis for Sgf73-mediated RLS extension, we performed ChIP-Seq, identified 388 unique genomic regions occupied by Sgf73, and noted enrichment in promoters of ribosomal protein (RP)-encoding genes. Of 388 Sgf73 binding sites, 33 correspond to 5' regions of genes implicated in RLS extension, including 20 genes encoding RPs. Furthermore, half of Sgf73-occupied, RLS-linked RP genes displayed significantly reduced expression in sgf73Δ mutants, and double null strains lacking SGF73 and a Sgf73-regulated, RLS-linked RP gene exhibited no further increase in replicative lifespan. We also found that sgf73Δ mutants display altered acetylation of Ifh1, an important regulator of RP gene transcription. These findings implicate altered ribosomal protein expression in sgf73Δ yeast RLS and highlight altered acetylation as a pathway of relevance for SCA7 neurodegeneration.

Indexed as

Gene DeletionGene Expression Regulation, FungalPromoter Regions, GeneticAcetylationAtaxin-7Base SequenceBinding SitesCell DivisionHistone AcetyltransferasesHumansMicrobial ViabilityMolecular Sequence AnnotationProtein BindingRibosomal ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAtaxin-7Histone AcetyltransferasesIFH1 protein, S cerevisiaeRibosomal ProteinsSaccharomyces cerevisiae ProteinsSgf73 protein, S cerevisiaeTrans-Activatorsgenome-wide occupancylongevity geneNeurodegenerationreplicative lifespanSgf73yeast

Identifiers

PMID28568901
PMCPMC5506417
OpenAlexW2618750831

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.