Evidence map›Paper›PMID 28566324›Full record

ArticleThe Journal of cell biology2017

Multi-omics analysis identifies ATF4 as a key regulator of the mitochondrial stress response in mammals.

Pedro M Quirós, Miguel A Prado, Nicola Zamboni, Davide D'Amico, Robert W Williams, Daniel Finley, Steven P Gygi, Johan Auwerx

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 530 papers.

0numbers the graph read from it
0cells of the map it votes in
530citing papers in PubMed
28.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

530 citing papers in PubMed, 818 citations in OpenAlex.

  1. Trial
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  4. HSP60 and HSP10 depletion provoke distinct biological responses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Article
  5. Article
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  8. The role of ATF4 in neurons under mitochondrial stress.NAR genomics and bioinformatics · 2026
    Article
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  11. Adaptation of OXPHOS biogenesis to cellular requirements.Protein science : a publication of the Protein Society · 2026
    Review
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  15. Article
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470 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Pedro M QuirósLaboratory for Integrative and Systems Physiology, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Miguel A PradoDepartment of Cell Biology, Harvard Medical School, Boston, MA.ORCID 0000-0002-4914-1619
Nicola ZamboniDepartment of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, Zurich, Switzerland.
Davide D'AmicoLaboratory for Integrative and Systems Physiology, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID 0000-0002-8499-9514
Robert W WilliamsDepartment of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN.
Daniel FinleyDepartment of Cell Biology, Harvard Medical School, Boston, MA.
Steven P GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA.
Johan AuwerxLaboratory for Integrative and Systems Physiology, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland admin.auwerx@epfl.ch.ORCID 0000-0002-5065-5393
École Polytechnique Fédérale de Lausanne · CHHarvard University · USETH Zurich · CHUniversity of Tennessee Health Science Center · US

Funding

New Sample Multiplexing Technologies to Identify Chemical Probes and Illuminate Ubiquitin BiologyR01GM067945 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI GYGI, STEVEN P · 2003 to 2024
$10.5M
Translational Systems Genetics of Mitochondria, Metabolism, and AgingR01AG043930 · NIA · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI WILLIAMS, ROBERT W. · 2013 to 2017
$2.5M
Ubiquitin chain editing by the mammalian proteasomeR01GM095526 · NIGMS · HARVARD MEDICAL SCHOOL · PI FINLEY, DANIEL J · 2011 to 2014
$1.8M
NIA NIH HHS R01 AG043930NIGMS NIH HHS R01 GM067945NIGMS NIH HHS R01 GM095526
6 · The paper itself

Abstract

Mitochondrial stress activates a mitonuclear response to safeguard and repair mitochondrial function and to adapt cellular metabolism to stress. Using a multiomics approach in mammalian cells treated with four types of mitochondrial stressors, we identify activating transcription factor 4 (ATF4) as the main regulator of the stress response. Surprisingly, canonical mitochondrial unfolded protein response genes mediated by ATF5 are not activated. Instead, ATF4 activates the expression of cytoprotective genes, which reprogram cellular metabolism through activation of the integrated stress response (ISR). Mitochondrial stress promotes a local proteostatic response by reducing mitochondrial ribosomal proteins, inhibiting mitochondrial translation, and coupling the activation of the ISR with the attenuation of mitochondrial function. Through a trans-expression quantitative trait locus analysis, we provide genetic evidence supporting a role for Fh1 in the control of Atf4 expression in mammals. Using gene expression data from mice and humans with mitochondrial diseases, we show that the ATF4 pathway is activated in vivo upon mitochondrial stress. Our data illustrate the value of a multiomics approach to characterize complex cellular networks and provide a versatile resource to identify new regulators of mitochondrial-related diseases.

Indexed as

Energy MetabolismStress, PhysiologicalActivating Transcription Factor 4AnimalsComputational BiologyDisease Models, AnimalEndopeptidase ClpEpigenesis, GeneticGene Expression RegulationGene Regulatory NetworksGenetic Predisposition to DiseaseGenomicsHeLa CellsHigh-Temperature Requirement A Serine Peptidase 2HumansMembrane Potential, MitochondrialActivating Transcription Factor 4ATF4 protein, humanAtf4 protein, mouseATP dependent 26S proteaseCLPP protein, mouseEndopeptidase ClpHigh-Temperature Requirement A Serine Peptidase 2Mitochondrial ProteinsProteasome Endopeptidase ComplexProteomeRibosomal ProteinsSerine Endopeptidases

Identifiers

PMID28566324
PMCPMC5496626
OpenAlexW2618870156

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.