Evidence map›Paper›PMID 28565913›Full record

ArticleBiointerphases2017

Outer membrane cytochromes/flavin interactions in Shewanella spp.-A molecular perspective.

Sofia Babanova, Ivana Matanovic, Jose Cornejo, Orianna Bretschger, Kenneth Nealson, Plamen Atanassov

Abstract read
In one paragraph

Article in Biointerphases, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sofia BabanovaChemical and Biological Engineering Department, Center for Micro-engineering Materials, University of New Mexico, Albuquerque, New Mexico 87131.
Ivana MatanovicChemical and Biological Engineering Department, Center for Micro-engineering Materials, University of New Mexico, Albuquerque, New Mexico 87131 and Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545.
Jose CornejoChemical and Biological Engineering Department, Center for Micro-engineering Materials, University of New Mexico, Albuquerque, New Mexico 87131.
Orianna BretschgerJ. Craig Venter Institute, San Diego, California 92037.
Kenneth NealsonJ. Craig Venter Institute, San Diego, California 92037 and Departments of Earth Sciences and Biological Sciences, University of Southern California, Los Angeles, California 90089.
Plamen AtanassovTheoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545.

Funding

UNM Initiative to Maximize Student Diversity (IMSD)R25GM060201 · NIGMS · UNIVERSITY OF NEW MEXICO · PI WERNER-WASHBURNE, MARGRET C. · 2000 to 2017
$9.9M
NIGMS NIH HHS R25 GM060201
6 · The paper itself

Abstract

Extracellular electron transfer (EET) is intrinsically associated with the core phenomena of energy harvesting/energy conversion in natural ecosystems and biotechnology applications. However, the mechanisms associated with EET are complex and involve molecular interactions that take place at the "bionano interface" where biotic/abiotic interactions are usually explored. This work provides molecular perspective on the electron transfer mechanism(s) employed by Shewanella oneidensis MR-1. Molecular docking simulations were used to explain the interfacial relationships between two outer-membrane cytochromes (OMC) OmcA and MtrC and riboflavin (RF) and flavin mononucleotide (FMN), respectively. OMC-flavin interactions were analyzed by studying the electrostatic potential, the hydrophilic/hydrophobic surface properties, and the van der Waals surface of the OMC proteins. As a result, it was proposed that the interactions between flavins and OMCs are based on geometrical recognition event. The possible docking positions of RF and FMN to OmcA and MtrC were also shown.

Indexed as

Molecular Docking SimulationBacterial Outer Membrane ProteinsCytochrome c GroupElectron TransportFlavin MononucleotideRiboflavinShewanellaBacterial Outer Membrane ProteinsCytochrome c GroupFlavin MononucleotideMtrC protein, ShewanellaRiboflavin

Identifiers

PMID28565913
PMCPMC5451299

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.