Evidence map›Paper›PMID 28561029›Full record

ArticleNature communications2017

Bacterial RadA is a DnaB-type helicase interacting with RecA to promote bidirectional D-loop extension.

Léa Marie, Chiara Rapisarda, Violette Morales, Mathieu Bergé, Thomas Perry, Anne-Lise Soulet, Clémence Gruget, Han Remaut, Rémi Fronzes, Patrice Polard

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 103 citations in OpenAlex.

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  11. Bacterial cell volume regulation and the importance of cyclic di-AMP.Microbiology and molecular biology reviews : MMBR · 2024
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  12. Review
  13. Article
  14. Generation and Repair of Postreplication Gaps in Escherichia coli.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  15. Article
  16. Article
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  18. Article
  19. International journal of molecular sciences · 2023
    Article
  20. The RecA-directed recombination pathway of natural transformation initiates at chromosomal replication forks in the pneumococcus.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Léa MarieLaboratoire de Microbiologie et Génétique Moléculaires, UMR5100, Centre de Biologie Intégrative (CBI), Centre National de la Recherche Scientifique (CNRS), Université de Toulouse, UPS, Toulouse F-31062, France.
Chiara RapisardaDepartment of Structural Biology and Chemistry, G5 Biologie structurale de la sécrétion bactérienne, UMR 3528, CNRS/Institut Pasteur, Institut Pasteur, 25-28 rue du Docteur Roux, Paris 75015, France.
Violette MoralesLaboratoire de Microbiologie et Génétique Moléculaires, UMR5100, Centre de Biologie Intégrative (CBI), Centre National de la Recherche Scientifique (CNRS), Université de Toulouse, UPS, Toulouse F-31062, France.
Mathieu BergéLaboratoire de Microbiologie et Génétique Moléculaires, UMR5100, Centre de Biologie Intégrative (CBI), Centre National de la Recherche Scientifique (CNRS), Université de Toulouse, UPS, Toulouse F-31062, France.
Thomas PerryDepartment of Structural Biology and Chemistry, G5 Biologie structurale de la sécrétion bactérienne, UMR 3528, CNRS/Institut Pasteur, Institut Pasteur, 25-28 rue du Docteur Roux, Paris 75015, France.
Anne-Lise SouletLaboratoire de Microbiologie et Génétique Moléculaires, UMR5100, Centre de Biologie Intégrative (CBI), Centre National de la Recherche Scientifique (CNRS), Université de Toulouse, UPS, Toulouse F-31062, France.
Clémence GrugetDepartment of Structural Biology and Chemistry, G5 Biologie structurale de la sécrétion bactérienne, UMR 3528, CNRS/Institut Pasteur, Institut Pasteur, 25-28 rue du Docteur Roux, Paris 75015, France.
Han RemautStructural and Molecular Microbiology, Structural Biology Research Center, VIB, Pleinlaan 2, Brussels 1050, Belgium.
Rémi FronzesDepartment of Structural Biology and Chemistry, G5 Biologie structurale de la sécrétion bactérienne, UMR 3528, CNRS/Institut Pasteur, Institut Pasteur, 25-28 rue du Docteur Roux, Paris 75015, France.
Patrice PolardLaboratoire de Microbiologie et Génétique Moléculaires, UMR5100, Centre de Biologie Intégrative (CBI), Centre National de la Recherche Scientifique (CNRS), Université de Toulouse, UPS, Toulouse F-31062, France.
Institut Pasteur · FRLaboratoire de Microbiologie et Génétique Moléculaires · FRUniversité Toulouse III - Paul Sabatier · FRCentre National de la Recherche Scientifique · FRVIB-VUB Center for Structural Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Homologous recombination (HR) is a central process of genome biology driven by a conserved recombinase, which catalyses the pairing of single-stranded DNA (ssDNA) with double-stranded DNA to generate a D-loop intermediate. Bacterial RadA is a conserved HR effector acting with RecA recombinase to promote ssDNA integration. The mechanism of this RadA-mediated assistance to RecA is unknown. Here, we report functional and structural analyses of RadA from the human pathogen Streptococcus pneumoniae. RadA is found to facilitate RecA-driven ssDNA recombination over long genomic distances during natural transformation. RadA is revealed as a hexameric DnaB-type helicase, which interacts with RecA to promote orientated unwinding of branched DNA molecules mimicking D-loop boundaries. These findings support a model of DNA branch migration in HR, relying on RecA-mediated loading of RadA hexamers on each strand of the recipient dsDNA in the D-loop, from which they migrate divergently to facilitate incorporation of invading ssDNA.

Indexed as

Bacterial ProteinsCrystallography, X-RayDnaB HelicasesDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedHomologous RecombinationMutagenesis, Site-DirectedProtein DomainsProtein Structure, QuaternaryRec A RecombinasesRecombination, GeneticStreptococcus pneumoniaeTwo-Hybrid System TechniquesBacterial ProteinsDnaB HelicasesDNA-Binding ProteinsDNA HelicasesDNA, Single-StrandedRadA protein, bacteriaRec A Recombinases

Identifiers

PMID28561029
PMCPMC5512693
OpenAlexW2620530413

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.