Evidence map›Paper›PMID 28558972›Full record

ArticleBioorganic & medicinal chemistry letters2017

Structure-based identification of inhibitors targeting obstruction of the HIVgp41 N-heptad repeat trimer.

T Dwight McGee, Hyun Ah Yi, William J Allen, Amy Jacobs, Robert C Rizzo

Open access · greenAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry letters, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

  1. DOCKweb: a web-based GUI platform for molecular modeling with DOCK6.Journal of computer-aided molecular design · 2026
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  3. Mutations in Mig6 reduce inhibition of the epidermal growth factor receptor.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  4. Article
  5. Article
  6. A molecular evolution algorithm for ligand design in DOCK.Journal of computational chemistry · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

T Dwight McGeeDepartment of Applied Mathematics & Statistics, Stony Brook University, Stony Brook, NY 11794, United States.
Hyun Ah YiDepartment of Microbiology and Immunology, State University of New York at Buffalo, Buffalo, NY 14214, United States.
William J AllenDepartment of Applied Mathematics & Statistics, Stony Brook University, Stony Brook, NY 11794, United States.
Amy JacobsDepartment of Microbiology and Immunology, State University of New York at Buffalo, Buffalo, NY 14214, United States.
Robert C RizzoDepartment of Applied Mathematics & Statistics, Stony Brook University, Stony Brook, NY 11794, United States; Institute of Chemical Biology & Drug Discovery, Stony Brook University, Stony Brook, NY 11794, United States; Laufer Center for Physical & Quantitative Biology, Stony Brook University, Stony Brook, NY 11794, United States. Electronic address: rizzorc@gmail.com.
Stony Brook University · USUniversity at Buffalo, State University of New York · US

Funding

Virology/Immunology CoreP30AI078498 · NIAID · UNIVERSITY OF ROCHESTER · PI DEWHURST, STEPHEN · 2008 to 2018
$14.6M
Computational Design of Fusion Inhibitors Targeting Drug-resistant HIVgp41R01GM083669 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI RIZZO, ROBERT C. · 2008 to 2016
$2.6M
Molecular details of HIV fusion revealed using novel gp41 labelingR21AI102796 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI JACOBS, AMY LYNN · 2013 to 2014
$379k
Ligand-based Design of Anti-HIV Therapeutics Targeting gp41F32GM105400 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI ALLEN, WILLIAM J · 2013 to 2014
$102k
NIAID NIH HHS P30 AI078498NIAID NIH HHS R21 AI102796NIGMS NIH HHS F32 GM105400NIGMS NIH HHS R01 GM083669
6 · The paper itself

Abstract

The viral protein HIVgp41 is an attractive and validated drug target that proceeds through a sequence of conformational changes crucial for membrane fusion, which facilitates viral entry. Prior work has identified inhibitors that interfere with the formation of a required six-helix bundle, composed of trimeric C-heptad (CHR) and N-heptad (NHR) repeat elements, through blocking association of an outer CHR helix or obstructing formation of the inner NHR trimer itself. In this work, we employed similarity-based scoring to identify and experimentally characterize 113 compounds, related to 2 small-molecule inhibitors recently reported by Allen et al. (Bioorg. Med. Chem Lett.2015, 25 2853-59), proposed to act via the NHR trimer obstruction mechanism. The compounds were first tested in an HIV cell-cell fusion assay with the most promising evaluated in a second, more biologically relevant viral entry assay. Of the candidates, compound #11 emerged as the most promising hit (IC

Indexed as

Drug DesignAmino Acid SequenceBinding SitesCell LineCell SurvivalHIVHIV Envelope Protein gp41HIV Fusion InhibitorsHumansMolecular Docking SimulationPeptide FragmentsProtein Structure, TertiaryVirus InternalizationHIV Envelope Protein gp41HIV Fusion Inhibitorspeptide C34Peptide FragmentsComputer-aided drug designDOCKDockingFootprint similaritygp41HIVHungarian similarityStructure-based drug designViral entryVirtual screening

Identifiers

PMID28558972
PMCPMC5551449
OpenAlexW2613159774

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.