ArticleBMC genomics2017
In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping.
Article in BMC genomics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- Integrative machine learning approach for identifying genes associated with quantitative traits: A soybean (Glycine max) yield case study.The plant genome · 2026Article
- Genome-wide association mapping dissects the selective breeding of determinacy and photoperiod sensitivity in common bean (Phaseolus vulgaris L.).G3 (Bethesda, Md.) · 2025Article
- Discovery of variation in genes related to agronomic traits by sequencing the genome of Cucurbita pepo varieties.BMC genomics · 2025Article
- Genetic diversity and population structure studies of West African sweetpotato [Ipomoea batatas (L.) Lam] collection using DArTseq.PloS one · 2025Article
- Genome-Wide Association for Morphological and Agronomic Traits inPlants (Basel, Switzerland) · 2024Article
- Sampling strategies for genotyping common bean (Frontiers in plant science · 2024Article
- Genomic insights into genetic diversity and seed coat color change in common bean composite populations.Frontiers in plant science · 2024Article
- DArTseq genotyping facilitates the transfer of "exotic" chromatin from aFrontiers in plant science · 2024Article
- Unraveling the genetics of heat tolerance in chickpea landraces (Frontiers in plant science · 2024Article
- Efficiency of RAPD and SCoT Markers in the Genetic Diversity Assessment of the Common Bean.Plants (Basel, Switzerland) · 2023Article
- Mapping yield and yield-related traits using diverse common bean germplasm.Frontiers in genetics · 2023Article
- Article
- Genome-wide association analysis reveals the optimal genomic regions for pod size in bean.Frontiers in plant science · 2023Article
- Genome-Wide association analysis of phenotypic traits in Bambara groundnut under drought-stressed and non-stressed conditions based on DArTseq SNP.Frontiers in plant science · 2023Article
- Meta-QTL Analysis for Yield Components in Common Bean (Plants (Basel, Switzerland) · 2022Article
- Analysis of Genetic Diversity and Population Structure of Cowpea (Plants (Basel, Switzerland) · 2022Article
- Article
- Analysis of genetic diversity among common bean germplasm by start codon targeted (SCoT) markers.Molecular biology reports · 2022Article
- Unravelling the Genetic Architecture of Rust Resistance in the Common Bean (Plants (Basel, Switzerland) · 2022Article
- Genetic diversity and population structure of an African yam bean (Sphenostylis stenocarpa) collection from IITA GenBank.Scientific reports · 2022Article
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14 authors.
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No grant is acknowledged in the PubMed record.
Abstract
backgroundCommon bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs.
resultsUsing this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56.7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average H
conclusionsFor common bean, DArTseq provides an efficient and cost-effective strategy of generating SNPs for large-scale genome-wide studies. The DArTseq resulted in an operational panel of 560 polymorphic SNPs in linkage equilibrium, providing high genome coverage. This SNP set could be used in genotyping platforms with many applications, such as population genetics, phylogeny relation between common bean varieties and support to molecular breeding approaches.
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