Evidence map›Paper›PMID 28558648›Full record

ArticleBMC evolutionary biology2017

Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents.

Phuong-Thao Ho, Eunji Park, Soon Gyu Hong, Eun-Hye Kim, Kangchon Kim, Sook-Jin Jang, Robert C Vrijenhoek, Yong-Jin Won

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Phuong-Thao HoInterdisciplinary Program of EcoCreative, The Graduate School, Ewha Womans University, Seoul, 03760, Korea.
Eunji ParkDivision of EcoScience, Ewha Womans University, Seoul, 03760, Korea.
Soon Gyu HongDivision of Polar Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.
Eun-Hye KimDivision of Polar Life Sciences, Korea Polar Research Institute, 26 Songdomirae-ro, Yeonsu-gu, Incheon, 21990, Republic of Korea.
Kangchon KimInterdisciplinary Program of EcoCreative, The Graduate School, Ewha Womans University, Seoul, 03760, Korea.
Sook-Jin JangInterdisciplinary Program of EcoCreative, The Graduate School, Ewha Womans University, Seoul, 03760, Korea.
Robert C VrijenhoekMonterey Bay Aquarium Research Institute, Moss Landing, CA, 95039, USA.
Yong-Jin WonInterdisciplinary Program of EcoCreative, The Graduate School, Ewha Womans University, Seoul, 03760, Korea. won@ewha.ac.kr.ORCID 0000-0003-1343-8418
Ewha Womans University · KRKorea Polar Research Institute · KRMonterey Bay Aquarium Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundChemolithoautotrophic primary production sustains dense invertebrate communities at deep-sea hydrothermal vents and hydrocarbon seeps. Symbiotic bacteria that oxidize dissolved sulfur, methane, and hydrogen gases nourish bathymodiolin mussels that thrive in these environments worldwide. The mussel symbionts are newly acquired in each generation via infection by free-living forms. This study examined geographical subdivision of the thiotrophic endosymbionts hosted by Bathymodiolus mussels living along the eastern Pacific hydrothermal vents. High-throughput sequencing data of 16S ribosomal RNA encoding gene and fragments of six protein-coding genes of symbionts were examined in the samples collected from nine vent localities at the East Pacific Rise, Galápagos Rift, and Pacific-Antarctic Ridge.

resultsBoth of the parapatric sister-species, B. thermophilus and B. antarcticus, hosted the same numerically dominant phylotype of thiotrophic Gammaproteobacteria. However, sequences from six protein-coding genes revealed highly divergent symbiont lineages living north and south of the Easter Microplate and hosted by these two Bathymodiolus mussel species. High heterogeneity of symbiont haplotypes among host individuals sampled from the same location suggested that stochasticity associated with initial infections was amplified as symbionts proliferated within the host individuals. The mussel species presently contact one another and hybridize along the Easter Microplate, but the northern and southern symbionts appear to be completely isolated. Vicariance associated with orogeny of the Easter Microplate region, 2.5-5.3 million years ago, may have initiated isolation of the symbiont and host populations. Estimates of synonymous substitution rates for the protein-coding bacterial genes examined in this study were 0.77-1.62%/nucleotide/million years.

conclusionsOur present study reports the most comprehensive population genetic analyses of the chemosynthetic endosymbiotic bacteria based on high-throughput genetic data and extensive geographical sampling to date, and demonstrates the role of the geographical features, the Easter Microplate and geographical distance, in the intraspecific divergence of this bacterial species along the mid-ocean ridge axes in the eastern Pacific. Altogether, our results provide insights into extrinsic and intrinsic factors affecting the dispersal and evolution of chemosynthetic symbiotic partners in the hydrothermal vents along the eastern Pacific Ocean.

Indexed as

Hydrothermal VentsAnimalsAntarctic RegionsBacteriaBiological EvolutionGenetics, PopulationHybridization, GeneticMytilidaePacific OceanPhylogenyRNA, Ribosomal, 16SSymbiosisRNA, Ribosomal, 16SBathymodiolus musselsChemosynthetic symbiosisDeep-sea hydrothermal ventGammaproteobacteriaGeographical population structureSulfur-oxidizing endosymbiont

Identifiers

PMID28558648
PMCPMC5450337
OpenAlexW2617941434

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.