Evidence map›Paper›PMID 28558066›Full record

ArticlePloS one2017

Gene expression analysis of rocket salad under pre-harvest and postharvest stresses: A transcriptomic resource for Diplotaxis tenuifolia.

Marina Cavaiuolo, Giacomo Cocetta, Natasha Damiana Spadafora, Carsten T Müller, Hilary J Rogers, Antonio Ferrante

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. LED omics in Rocket Salad (Plants (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Recent Findings Unravel Genes and Genetic Factors UnderlyingInternational journal of molecular sciences · 2020
    Review
  7. Borage extracts affect wild rocket quality and influence nitrate and carbon metabolism.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020
    Article
  8. Article
  9. TheFrontiers in plant science · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Marina CavaiuoloDepartment of Agricultural and Environmental Sciences, Università degli Studi di Milano, Milano, Italy.
Giacomo CocettaDepartment of Agricultural and Environmental Sciences, Università degli Studi di Milano, Milano, Italy.
Natasha Damiana SpadaforaSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Carsten T MüllerSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Hilary J RogersSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Antonio FerranteDepartment of Agricultural and Environmental Sciences, Università degli Studi di Milano, Milano, Italy.ORCID http://orcid.org/0000-0001-7781-9784
Cardiff University · GBUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diplotaxis tenuifolia L. is of important economic value in the fresh-cut industry for its nutraceutical and sensorial properties. However, information on the molecular mechanisms conferring tolerance of harvested leaves to pre- and postharvest stresses during processing and shelf-life have never been investigated. Here, we provide the first transcriptomic resource of rocket by de novo RNA sequencing assembly, functional annotation and stress-induced expression analysis of 33874 transcripts. Transcriptomic changes in leaves subjected to commercially-relevant pre-harvest (salinity, heat and nitrogen starvation) and postharvest stresses (cold, dehydration, dark, wounding) known to affect quality and shelf-life were analysed 24h after stress treatment, a timing relevant to subsequent processing of salad leaves. Transcription factors and genes involved in plant growth regulator signaling, autophagy, senescence and glucosinolate metabolism were the most affected by the stresses. Hundreds of genes with unknown function but uniquely expressed under stress were identified, providing candidates to investigate stress responses in rocket. Dehydration and wounding had the greatest effect on the transcriptome and different stresses elicited changes in the expression of genes related to overlapping groups of hormones. These data will allow development of approaches targeted at improving stress tolerance, quality and shelf-life of rocket with direct applications in the fresh-cut industries.

Indexed as

Gene Expression ProfilingStress, PhysiologicalTranscriptomeAnimalsColeopteraPlant LeavesReverse Transcriptase Polymerase Chain Reaction

Identifiers

PMID28558066
PMCPMC5448768
OpenAlexW2619709584

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.