Evidence map›Paper›PMID 28556790›Full record

ArticleGenes2017

DNA Methylation Profiling of Human Prefrontal Cortex Neurons in Heroin Users Shows Significant Difference between Genomic Contexts of Hyper- and Hypomethylation and a Younger Epigenetic Age.

Alexey Kozlenkov, Andrew E Jaffe, Alisa Timashpolsky, Pasha Apontes, Sergei Rudchenko, Mihaela Barbu, William Byne, Yasmin L Hurd, Steve Horvath, Stella Dracheva

Open access · goldAbstract read
In one paragraph

Article in Genes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed, 2 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 2 syntheses or guidelines pooled it, 91 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Epigenetic mechanisms of HIV and opioid-induced neuropathology: Potential therapies and interventions.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
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  16. Article
  17. Molecular Changes Associated with Suicide.International journal of molecular sciences · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Alexey KozlenkovJames J. Peters VA Medical Center, Bronx, NY 10468, USA. alexey.kozlenkov@mssm.edu.
Andrew E JaffeLieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, MD 21205, USA. andrew.jaffe@libd.org.
Alisa TimashpolskyJames J. Peters VA Medical Center, Bronx, NY 10468, USA. alisa.timashpolsky@gmail.com.
Pasha ApontesJames J. Peters VA Medical Center, Bronx, NY 10468, USA. p.apontes@gmail.com.
Sergei RudchenkoHospital for Special Surgery, New York, NY 10021, USA. RudchenkoS@hss.edu.
Mihaela BarbuHospital for Special Surgery, New York, NY 10021, USA. mihaela72000@yahoo.com.
William ByneJames J. Peters VA Medical Center, Bronx, NY 10468, USA. william.byne@mssm.edu.
Yasmin L HurdThe Friedman Brain Institute and Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. yasmin.hurd@mssm.edu.
Steve HorvathDepartment of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA 90095, USA. shorvath@mednet.ucla.edu.
Stella DrachevaJames J. Peters VA Medical Center, Bronx, NY 10468, USA. stella.dracheva@mssm.com.
Allen Institute for Brain Science · USHospital for Special Surgery · USIcahn School of Medicine at Mount Sinai · USJames J. Peters VA Medical Center · USLieber Institute for Brain Development · USUniversity of California, Los Angeles · US

Funding

TRANSGENIC COREP01DA008227 · NIDA · YALE UNIVERSITY · PI NESTLER, ERIC J. · 1993 to 2018
$28.1M
Cell Specificity of the Human Heroin EpigenomeR01DA043247 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DRACHEVA, STELLA, HURD, YASMIN L. · 2017 to 2021
$2.7M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Probing the Link between RNA Editing and Drug AddictionR21DA031557 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DRACHEVA, STELLA · 2011 to 2012
$352k
Genetic and Molecular Determinants of SuicideI01BX001829 · VA · JAMES J PETERS VA MEDICAL CENTER · PI DRACHEVA, STELLA · 2014 to 2016
–
BLRD VA I01 BX001829NIDA NIH HHS P01 DA008227NIDA NIH HHS R01 DA043247NIDA NIH HHS R21 DA031557NIH HHS S10 OD018522
6 · The paper itself

Abstract

We employed Illumina 450 K Infinium microarrays to profile DNA methylation (DNAm) in neuronal nuclei separated by fluorescence-activated sorting from the postmortem orbitofrontal cortex (OFC) of heroin users who died from heroin overdose (

Indexed as

brainDNA methylationdrug addictionheroinhumanneuronssuicide

Identifiers

PMID28556790
PMCPMC5485516
OpenAlexW2617514739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.