Evidence map›Paper›PMID 28555376›Full record

ArticleCurrent microbiology2017

Proteomic Analysis Revealed the Fruiting-Body Protein Profile of Auricularia polytricha.

Dinghong Jia, Bo Wang, Xiaolin Li, Weihong Peng, Jie Zhou, Hao Tan, Jie Tang, Zhongqian Huang, Wei Tan, Bingcheng Gan and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Molecules (Basel, Switzerland) · 2020
    Article
  7. Comparative Proteomic Analysis ofInternational journal of molecular sciences · 2019
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Dinghong JiaKey Laboratory of Biological Resource and Ecological Environment of the Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China.
Bo WangSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Xiaolin LiSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Weihong PengSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Jie ZhouSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Hao TanSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Jie TangSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Zhongqian HuangSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Wei TanSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Bingcheng GanSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Zhirong YangSoil and Fertilizer Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 610066, China.
Jian ZhaoKey Laboratory of Biological Resource and Ecological Environment of the Ministry of Education, College of Life Sciences, Sichuan University, Chengdu, 610064, China. zj804@163.com.
Sichuan Academy of Agricultural Sciences · CNSichuan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auricularia polytricha is one of the most widely cultivated edible mushrooms in China. Many advances have been made to A. polytricha, but there is still no proteomic information of this species. Our current understanding was based upon the translated information of its transcriptome or other relative species. This study presented the proteomic information of fruiting-body proteins by shotgun liquid chromatography and tandem mass spectrometry (LC-MS/MS), which identified 15,508 peptides corresponding to 1850 high-confidence proteins. Of these, 1383 were annotated across the GO subcategories with 829 (44.81%) involved in biological process, 908 (49.08%) in molecular function, and 406 (21.95%) in cellular components. Among these high-confidence proteins, 132 proteins were annotated as carbohydrate-active enzymes, of which 51 were secreted enzymes. Moreover, a number of commercially important enzymes were detected, functioning as auxiliary activity (AA) family 5 glyoxal oxidase, AA5 galactose oxidase, glycoside hydrolase (GH) family 20 hexosaminidase, and GH47 alpha-mannosidase. To the best of our knowledge, this is the first study to characterize A. polytricha proteome, and also fills the gap of our knowledge on the under-developed mushroom species.

Indexed as

BasidiomycotaChinaChromatography, LiquidFruiting Bodies, FungalFungal ProteinsMolecular Sequence AnnotationProteomeProteomicsTandem Mass SpectrometryFungal ProteinsProteome

Identifiers

PMID28555376
OpenAlexW2618192713

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.