Evidence map›Paper›PMID 28553510›Full record

ArticleChemical science2017

Model-free extraction of spin label position distributions from pseudocontact shift data.

Elizaveta A Suturina, Daniel Häussinger, Kaspar Zimmermann, Luca Garbuio, Maxim Yulikov, Gunnar Jeschke, Ilya Kuprov

Abstract read
In one paragraph

Article in Chemical science, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Observability of Paramagnetic NMR Signals at over 10 000 ppm Chemical Shifts.Angewandte Chemie (International ed. in English) · 2021
    Article
  3. Article
  4. ChemistryOpen · 2019
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Elizaveta A SuturinaSchool of Chemistry , University of Southampton , Highfield Campus , Southampton , SO17 1BJ , UK . Email: i.kuprov@soton.ac.uk.ORCID 0000-0003-4407-1882
Daniel HäussingerDepartment of Chemistry , University of Basel , St. Johanns Ring 19 , CH-4056 Basel , Switzerland.ORCID 0000-0002-4798-0072
Kaspar ZimmermannDepartment of Chemistry , University of Basel , St. Johanns Ring 19 , CH-4056 Basel , Switzerland.
Luca GarbuioDepartment of Chemistry and Applied Biosciences , Swiss Federal Institute of Technology in Zurich , Vladimir Prelog Weg 1-5/10 , CH-8093 Zürich , Switzerland.
Maxim YulikovDepartment of Chemistry and Applied Biosciences , Swiss Federal Institute of Technology in Zurich , Vladimir Prelog Weg 1-5/10 , CH-8093 Zürich , Switzerland.
Gunnar JeschkeDepartment of Chemistry and Applied Biosciences , Swiss Federal Institute of Technology in Zurich , Vladimir Prelog Weg 1-5/10 , CH-8093 Zürich , Switzerland.ORCID 0000-0001-6853-8585
Ilya KuprovSchool of Chemistry , University of Southampton , Highfield Campus , Southampton , SO17 1BJ , UK . Email: i.kuprov@soton.ac.uk.ORCID 0000-0003-0430-2682

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A significant problem with paramagnetic tags attached to proteins and nucleic acids is their conformational mobility. Each tag is statistically distributed within a volume between 5 and 10 Angstroms across; structural biology conclusions from NMR and EPR work are necessarily diluted by this uncertainty. The problem is solved in electron spin resonance, but remains open in the other major branch of paramagnetic resonance - pseudocontact shift (PCS) NMR spectroscopy, where structural biologists have so far been reluctantly using the point paramagnetic centre approximation. Here we describe a new method for extracting probability densities of lanthanide tags from PCS data. The method relies on Tikhonov-regularised 3D reconstruction and opens a new window into biomolecular structure and dynamics because it explores a very different range of conditions from those accessible to double electron resonance work on paramagnetic tags: a room-temperature solution rather than a glass at cryogenic temperatures. The method is illustrated using four different Tm

Identifiers

PMID28553510
PMCPMC5426344

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.