Evidence map›Paper›PMID 28552980›Full record

ArticlePloS one2017

Salt stress responsiveness of a wild cotton species (Gossypium klotzschianum) based on transcriptomic analysis.

Yangyang Wei, Yanchao Xu, Pu Lu, Xingxing Wang, Zhenqing Li, Xiaoyan Cai, Zhongli Zhou, Yuhong Wang, Zhenmei Zhang, Zhongxu Lin and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
39.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 110 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yangyang WeiState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.ORCID http://orcid.org/0000-0002-2171-1456
Yanchao XuState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Pu LuState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Xingxing WangState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Zhenqing LiState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Xiaoyan CaiState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Zhongli ZhouState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Yuhong WangState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Zhenmei ZhangState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Zhongxu LinNational Key Laboratory of Crop Genetic Improvement (Wuhan), Huazhong Agricultural University, Wuhan, Hubei, China.ORCID http://orcid.org/0000-0002-8537-4890
Fang LiuState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.
Kunbo WangState Key Laboratory of Cotton Biology, / Institute of Cotton Research of Chinese Academy of Agricultural Science (ICR-CAAS), Anyang, Henan, China.ORCID http://orcid.org/0000-0003-0922-9816
Cotton Research Institute · CNHuazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cotton is a pioneer of saline land crop, while salt stress still causes its growth inhibition and fiber production decrease. Phenotype identification showed better salt tolerance of a wild diploid cotton species Gossypium klotzschianum. To elucidate the salt-tolerant mechanisms in G. klotzschianum, we firstly detected the changes in hormones, H2O2 and glutathione (GSSH and GSH), then investigated the gene expression pattern of roots and leaves treated with 300 mM NaCl for 0, 3, 12, 48 h, and each time control by RNA-seq on the Illumina-Solexa platform. Physiological determination proved that the significant increase in hormone ABA at 48 h, while that in H2O2 was at 12 h, likewise, the GSH content decrease at 48 h and the GSSH content increase at 48 h, under salt stress. In total, 37,278 unigenes were identified from the transcriptome data, 8,312 and 6,732 differentially expressed genes (DEGs) were discovered to be involved in salt stress tolerance in roots and leaves, respectively. Gene function annotation and expression analysis elucidated hormone biosynthesis and signal transduction, reactive oxygen species (ROS), and salt overly sensitive (SOS) signal transduction related genes revealed the important roles of them in signal transmission, oxidation balance and ion homeostasis in response to salinity stress. This is a report which focuses on primary response to highly salty stress (upto 300 mM NaCl) in cotton using a wild diploid Gossypium species, broadening our understanding of the salt tolerance mechanism in cotton and laying a solid foundation of salt resistant for the genetic improvement of upland cotton with the resistance to salt stress.

Indexed as

SalinityStress, PhysiologicalTranscriptomeGossypiumOxidation-ReductionPlant Growth RegulatorsRNA, PlantSequence Analysis, RNASignal TransductionTranscription FactorsPlant Growth RegulatorsRNA, PlantTranscription Factors

Identifiers

PMID28552980
PMCPMC5446155
OpenAlexW2619818842

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.