Evidence map›Paper›PMID 28550152›Full record

ArticleThe EMBO journal2017

ER-plasma membrane contact sites contribute to autophagosome biogenesis by regulation of local PI3P synthesis.

Anna Chiara Nascimbeni, Francesca Giordano, Nicolas Dupont, Daniel Grasso, Maria I Vaccaro, Patrice Codogno, Etienne Morel

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 183 citations in OpenAlex.

  1. Review
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  9. Lysosomes' fallback strategies: more than just survival or death.Frontiers in cell and developmental biology · 2025
    Review
  10. DNA-Assisted Assays for Studying Lipid Transfer Between Membranes.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  11. Review
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  14. ATG16L1 induces the formation of phagophore-like membrane cups.Nature structural & molecular biology · 2024
    Article
  15. Review
  16. Article
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  19. Autophagy and Symbiosis: Membranes, ER, and Speculations.International journal of molecular sciences · 2024
    Review
  20. Review

64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Anna Chiara NascimbeniInstitut Necker-Enfants Malades (INEM), INSERM U1151-CNRS UMR 8253, Paris, France.
Francesca GiordanoInstitut Jacques Monod, CNRS UMR 7592, Paris, France.ORCID 0000-0002-5942-1753
Nicolas DupontInstitut Necker-Enfants Malades (INEM), INSERM U1151-CNRS UMR 8253, Paris, France.
Daniel GrassoDepartment of Pathophysiology, Institute of Biochemistry and Molecular Medicine, National Council for Scientific and Technological Research, School of Pharmacy and Biochemistry, University of Buenos Aires, Buenos Aires, Argentina.
Maria I VaccaroDepartment of Pathophysiology, Institute of Biochemistry and Molecular Medicine, National Council for Scientific and Technological Research, School of Pharmacy and Biochemistry, University of Buenos Aires, Buenos Aires, Argentina.
Patrice CodognoInstitut Necker-Enfants Malades (INEM), INSERM U1151-CNRS UMR 8253, Paris, France.
Etienne MorelInstitut Necker-Enfants Malades (INEM), INSERM U1151-CNRS UMR 8253, Paris, France etienne.morel@inserm.fr.ORCID 0000-0002-4763-4954
Délégation Paris 5 · FRUniversidad de Buenos Aires · ARCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The double-membrane-bound autophagosome is formed by the closure of a structure called the phagophore, origin of which is still unclear. The endoplasmic reticulum (ER) is clearly implicated in autophagosome biogenesis due to the presence of the omegasome subdomain positive for DFCP1, a phosphatidyl-inositol-3-phosphate (PI3P) binding protein. Contribution of other membrane sources, like the plasma membrane (PM), is still difficult to integrate in a global picture. Here we show that ER-plasma membrane contact sites are mobilized for autophagosome biogenesis, by direct implication of the tethering extended synaptotagmins (E-Syts) proteins. Imaging data revealed that early autophagic markers are recruited to E-Syt-containing domains during autophagy and that inhibition of E-Syts expression leads to a reduction in autophagosome biogenesis. Furthermore, we demonstrate that E-Syts are essential for autophagy-associated PI3P synthesis at the cortical ER membrane via the recruitment of VMP1, the stabilizing ER partner of the PI3KC3 complex. These results highlight the contribution of ER-plasma membrane tethers to autophagosome biogenesis regulation and support the importance of membrane contact sites in autophagy.

Indexed as

Organelle BiogenesisAnimalsAutophagosomesCarrier ProteinsCell MembraneDogsEndoplasmic ReticulumHeLa CellsHumansMadin Darby Canine Kidney CellsMembrane ProteinsPhosphatidylinositol PhosphatesSynaptotagminsCarrier ProteinsMembrane Proteinsphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesSynaptotagminsVMP1 protein, humanZFYVE1 protein, humanautophagosomecontact sitesextended synaptotagminsorganelle biogenesisPI3P

Identifiers

PMID28550152
PMCPMC5509996
OpenAlexW2617561678

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.