Evidence map›Paper›PMID 28546999›Full record

ArticleMolecular genetics & genomic medicine2017

A birth of bipartite exon by intragenic deletion.

Kandai Nozu, Kazumoto Iijima, Toru Igarashi, Shiro Yamada, Jana Kralovicova, Yoshimi Nozu, Tomohiko Yamamura, Shogo Minamikawa, Ichiro Morioka, Takeshi Ninchoji and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Kandai NozuDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Kazumoto IijimaDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Toru IgarashiDepartment of PediatricsNippon Medical School HospitalTokyoJapan.
Shiro YamadaDepartment of PediatricsTokai University Oiso HospitalOisoJapan.
Jana KralovicovaUniversity of Southampton Faculty of MedicineSouthamptonUK.
Yoshimi NozuDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Tomohiko YamamuraDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Shogo MinamikawaDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Ichiro MoriokaDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Takeshi NinchojiDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Hiroshi KaitoDepartment of PediatricsKobe University Graduate School of MedicineKobeJapan.
Koichi NakanishiDepartment of PediatricsWakayama Medical UniversityWakayamaJapan.
Igor VorechovskyUniversity of Southampton Faculty of MedicineSouthamptonUK.ORCID 0000-0002-6740-6502
Kobe University · JPUniversity of Southampton · GBNational Institute of Genetics · JPNippon Medical School Hospital · JPWakayama Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDisease-causing mutations that activate transposon-derived exons without creating a new splice-site consensus have been reported rarely, but they provided unique insights into our understanding of structural motifs required for inclusion of intronic sequences in mature transcripts.

methodsWe employ a combination of experimental and computational techniques to characterize the first de novo bipartite exon activation in genetic disease.

resultsThe exon originated from two separate introns as a result of an in-frame

conclusionThese results expand the repertoire of mutational mechanisms that alter RNA processing in genetic disease and illustrate the extraordinary versatility of transposed elements in shaping the new exon-intron structure and the phenotypic variability.

Indexed as

Alport syndromebranch siteCOL4A5deletionexonLINE‐1RNAsplicingtransposon

Identifiers

PMID28546999
PMCPMC5441408
OpenAlexW2593374511

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.