Evidence map›Paper›PMID 28546998›Full record

ArticleMolecular genetics & genomic medicine2017

Uniparental disomy determined by whole-exome sequencing in a spectrum of rare motoneuron diseases and ataxias.

Dana M Bis, Rebecca Schüle, Jennifer Reichbauer, Matthis Synofzik, Tim W Rattay, Anne Soehn, Peter de Jonghe, Ludger Schöls, Stephan Züchner

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  5. Article
  6. Uniparental disomy for chromosome 1 withFrontiers in genetics · 2023
    Article
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  12. Review
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  14. Article
  15. Article
  16. Article
  17. Article
  18. [Research progress on uniparental disomy in cancer].Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2019
    Review
  19. POLG mutations presenting as Charcot-Marie-Tooth disease.Journal of the peripheral nervous system : JPNS · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Dana M BisJohn P. Hussman Institute for Human GenomicsUniversity of MiamiMiamiFlorida.ORCID 0000-0002-4953-3487
Rebecca SchüleJohn P. Hussman Institute for Human GenomicsUniversity of MiamiMiamiFlorida.
Jennifer ReichbauerCenter for Neurology and Hertie Institute for Clinical Brain ResearchEberhard-Karls-UniversityTübingenGermany.
Matthis SynofzikCenter for Neurology and Hertie Institute for Clinical Brain ResearchEberhard-Karls-UniversityTübingenGermany.
Tim W RattayCenter for Neurology and Hertie Institute for Clinical Brain ResearchEberhard-Karls-UniversityTübingenGermany.
Anne SoehnDepartment of Medical GeneticsInstitute of Human GeneticsUniversity of TübingenTübingenGermany.
Peter de JongheNeurogenetics GroupDepartment of Molecular GeneticsVIBUniversity of AntwerpCampus Drie Eiken, Universiteitsplein 1Antwerp2610Belgium.
Ludger SchölsCenter for Neurology and Hertie Institute for Clinical Brain ResearchEberhard-Karls-UniversityTübingenGermany.
Stephan ZüchnerJohn P. Hussman Institute for Human GenomicsUniversity of MiamiMiamiFlorida.
German Center for Neurodegenerative Diseases · DEUniversity of Miami · USHertie Institute for Clinical Brain Research · DEUniversity of Antwerp · BEUniversity of Tübingen · DE

Funding

trainingU54NS065712 · NINDS · WAYNE STATE UNIVERSITY · PI ZUCHNER, STEPHAN · 2009 to 2023
$19.6M
GENOME STUDIES IN HEREDITARY SPASTIC PARAPLEGIA - beyond the exomeR01NS072248 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Stephan Zuchner · 2011 to 2026
$9.2M
NINDS NIH HHS R01 NS072248NINDS NIH HHS U54 NS065712
6 · The paper itself

Abstract

backgroundThe genetic causes of many rare inherited motoneuron diseases and ataxias (MND and ATX) remain largely unresolved, especially for sporadic patients, despite tremendous advances in gene discovery. Whole exome data is often available for patients, but it is rarely evaluated for unusual inheritance patterns, such as uniparental disomy (UPD). UPD is the inheritance of two copies of a chromosomal region from one parent, which may generate homozygosity for a deleterious recessive variant from only one carrier-parent. Detection of UPD-caused homozygous disease-causing variants is detrimental to accurate genetic counseling. Whole-exome sequencing can allow for the detection of such events.

methodsWe systematically studied the exomes of a phenotypically heterogeneous cohort of unresolved cases (

resultsOne hereditary spastic paraplegia case harbored homozygous regions spanning 80% of chromosome 16. A homozygous disease-causing mutation in the SPG35 disease gene was then identified within this region.

conclusionThis study demonstrates the ability to detect UPD in exome data of index patients. Our results suggest that UPD is a rare mechanism for recessive MND and ATX.

Indexed as

Ataxiamotoneuron diseaseuniparental disomywhole exome

Identifiers

PMID28546998
PMCPMC5441426
OpenAlexW2604126466

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.