Evidence map›Paper›PMID 28546995›Full record

ArticleMolecular genetics & genomic medicine2017

The cost and cost trajectory of whole-genome analysis guiding treatment of patients with advanced cancers.

Deirdre Weymann, Janessa Laskin, Robyn Roscoe, Kasmintan A Schrader, Stephen Chia, Stephen Yip, Winson Y Cheung, Karen A Gelmon, Aly Karsan, Daniel J Renouf and 2 more

Abstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Are whole-exome and whole-genome sequencing approaches cost-effective? A systematic review of the literature.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Pooled it
  2. Article
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  11. Novel approaches to liver disease diagnosis and modeling.Translational gastroenterology and hepatology · 2021
    Review
  12. Review
  13. From sequence to information.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  14. Translation of genomic epidemiology of infectious pathogens: Enhancing African genomics hubs for outbreaks.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Article
  15. Article
  16. Seq: A High-Performance Language for Bioinformatics.Proceedings of the ACM on programming languages · 2019
    Article
  17. Review
  18. Article
  19. Methodological Issues in Assessing the Economic Value of Next-Generation Sequencing Tests: Many Challenges and Not Enough Solutions.Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research · 2018
    Review
  20. The cost and diagnostic yield of exome sequencing for children with suspected genetic disorders: a benchmarking study.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Deirdre WeymannCanadian Centre for Applied Research in Cancer Control (ARCC)Cancer Control ResearchBC Cancer AgencyVancouverBritish ColumbiaCanada.ORCID 0000-0001-8876-0511
Janessa LaskinDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Robyn RoscoeCanada's Michael Smith Genome Sciences CentreBC Cancer AgencyVancouverBritish ColumbiaCanada.
Kasmintan A SchraderDepartment of Medical GeneticsFaculty of MedicineUniversity of British ColumbiaVancouverBritish ColumbiaCanada.
Stephen ChiaDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Stephen YipDepartment of Pathology & Laboratory MedicineFaculty of MedicineUniversity of British ColumbiaVancouverBritish ColumbiaCanada.
Winson Y CheungDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Karen A GelmonDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Aly KarsanDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Daniel J RenoufDivision of Medical OncologyBC Cancer AgencyVancouverBritish ColumbiaCanada.
Marco MarraCanada's Michael Smith Genome Sciences CentreBC Cancer AgencyVancouverBritish ColumbiaCanada.
Dean A RegierCanadian Centre for Applied Research in Cancer Control (ARCC)Cancer Control ResearchBC Cancer AgencyVancouverBritish ColumbiaCanada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLimited data exist on the real-world costs of applying whole-genome analysis (WGA) in a clinical setting. We estimated the costs of applying WGA to guide treatments for patients with advanced cancers and characterized how costs evolve over time.

methodsThe setting is the British Columbia Cancer Agency Personalized OncoGenomics (POG) program in British Columbia, Canada. Cost data were obtained for patients who enrolled in the program from 2012 to 2015. We estimated mean WGA costs using bootstrapping. We applied time series analysis and produced 10-year forecasts to determine when costs are expected to reach critical thresholds.

resultsThe mean cost of WGA over the study period was CDN$34,886 per patient (95% CI: $34,051, $35,721). Over time, WGA costs decreased, driven by a reduction in costs of sequencing. Yet, costs of other components of WGA increased. Forecasting showed WGA costs may not reach critical thresholds within the next 10 years.

conclusionWGA costs decreased over the studied time horizon, but expenditures needed to realize WGA remain significant. Future research exploring costs and benefits of WGA-guided cancer care are crucial to guide health policy.

Indexed as

Cost analysisoncologytranscriptome sequencingwhole‐genome sequencing

Identifiers

PMID28546995
PMCPMC5441418

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.