Evidence map›Paper›PMID 28546829›Full record

ArticleBioData mining2017

Vinasse fertirrigation alters soil resistome dynamics: an analysis based on metagenomic profiles.

Lucas P P Braga, Rafael F Alves, Marina T F Dellias, Acacio A Navarrete, Thiago O Basso, Siu M Tsai

Abstract readCase Reports
In one paragraph

Article in BioData mining, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lucas P P BragaCell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo (USP), Av. Centenário 303, Piracicaba, 13400-970 São Paulo Brazil.
Rafael F AlvesBrazilian Bioethanol Science and Technology Laboratory (CTBE), University of Campinas (Unicamp), Campinas, Brazil.
Marina T F DelliasCell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo (USP), Av. Centenário 303, Piracicaba, 13400-970 São Paulo Brazil.
Acacio A NavarreteCell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo (USP), Av. Centenário 303, Piracicaba, 13400-970 São Paulo Brazil.
Thiago O BassoDepartment of Chemical Engineering, Polytechnic School, University of São Paulo, São Paulo, Brazil.
Siu M TsaiCell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture (CENA), University of São Paulo (USP), Av. Centenário 303, Piracicaba, 13400-970 São Paulo Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Every year around 300 Gl of vinasse, a by-product of ethanol distillation in sugarcane mills, are flushed into more than 9 Mha of sugarcane cropland in Brazil. This practice links fermentation waste management to fertilization for plant biomass production, and it is known as fertirrigation. Here we evaluate public datasets of soil metagenomes mining for changes in antibiotic resistance genes (ARGs) of soils from sugarcane mesocosms repeatedly amended with vinasse. The metagenomes were annotated using the ResFam database. We found that the abundance of open read frames (ORFs) annotated as ARGs changed significantly across 43 different families (

Indexed as

AntibioticsMetagenomic profilesResistance genesResistomeSugarcaneVinasse

Identifiers

PMID28546829
PMCPMC5442679

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.