Evidence map›Paper›PMID 28546425›Full record

ArticleThe Journal of biological chemistry2017

The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.

Mayo Sato, Dorothee Liebschner, Yusuke Yamada, Naohiro Matsugaki, Takatoshi Arakawa, Siobhán S Wills, Mitchell Hattie, Keith A Stubbs, Tasuku Ito, Toshiya Senda and 2 more

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. FAD-dependentProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Review
  6. Review
  7. Review
  8. Enzymatic Adaptation ofMicroorganisms · 2020
    Review
  9. Article
  10. Utilization of Host-Derived Glycans by IntestinalFrontiers in microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Mayo SatoDepartment of Biotechnology, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.
Dorothee LiebschnerStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba 305-0801, Japan.
Yusuke YamadaStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba 305-0801, Japan.
Naohiro MatsugakiStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba 305-0801, Japan.
Takatoshi ArakawaDepartment of Biotechnology, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.
Siobhán S WillsSchool of Molecular Sciences, University of Western Australia, Crawley, Western Australia 6009, Australia.
Mitchell HattieSchool of Molecular Sciences, University of Western Australia, Crawley, Western Australia 6009, Australia.
Keith A StubbsSchool of Molecular Sciences, University of Western Australia, Crawley, Western Australia 6009, Australia.
Tasuku ItoDepartment of Biotechnology, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.
Toshiya SendaStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization, 1-1 Oho, Tsukuba 305-0801, Japan.
Hisashi AshidaFaculty of Biology-Oriented Science and Technology, Kindai University, 930 Nishimitani, Kinokawa-shi, Wakayama 649-6493, Japan.
Shinya FushinobuDepartment of Biotechnology, University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan. Electronic address: asfushi@mail.ecc.u-tokyo.ac.jp.
High Energy Accelerator Research Organization · JPThe University of Tokyo · JPThe University of Western Australia · AUKindai University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The α-

Indexed as

Acetylgalactosaminealpha-N-AcetylgalactosaminidaseAmino Acid SequenceAmino Acid SubstitutionBacterial ProteinsBifidobacterium bifidumBinding SitesCatalytic DomainCoenzymesConserved SequenceCrystallography, X-RayEnzyme InhibitorsGlycoside HydrolasesLigandsMetalsModels, MolecularAcetylgalactosaminealpha-N-AcetylgalactosaminidaseBacterial ProteinsCoenzymesEnzyme InhibitorsGlycoside HydrolasesLigandsMetalsRecombinant Fusion ProteinsBifidobacterium bifidumglycoside hydrolasemetal ion-protein interactionmucinX-ray crystallography

Identifiers

PMID28546425
PMCPMC5519364
OpenAlexW2616980022

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.